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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataacttgtttctccgtcctagtcttcaccttcgggttttataatttattgtcttgtctcttattttgcctttgctttctttcagTCTTTGATGTTGACTCTGAATAAGTTCAAGATTACTGAGGATCACAAGAAGTACTCAATCGATGAATTCGAACCCCTTCTTTTGTTCGGACTTAGCTGTG

Basic information

species Zea mays
transcript GRMZM2G165945_T01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71308122|gb|DR790285.1|DR790285
EST:     TAGAGTTTGTGATTCTAAAGATGAAGACTCCAGTTCATCGGCCCCAACTT                         TCTTTGATGTTGACTCTGAATAAGTTCAAGATTACTGAGGATCACAAGAAG
genomic: TAGAGTTTGTGATTCTAAAGATGAAGACTCCAGTTCATCGGCCCCAACTTgtataacttg ... tttctttcagTCTTTGATGTTGACTCTGAATAAGTTCAAGATTACTGAGGATCACAAGAAG
EST: gi|78087674|gb|DV516067.1|DV516067
EST:     TAGAGTTTGTGATTCTAAAGATGAAGACTCCAGTTCATCGGCCCCAACTT                         TCTTTGATGTTGACTCTGAATAAGTTCAAGATTACTGAGGATCACAAGAAG
genomic: TAGAGTTTGTGATTCTAAAGATGAAGACTCCAGTTCATCGGCCCCAACTTgtataacttg ... tttctttcagTCTTTGATGTTGACTCTGAATAAGTTCAAGATTACTGAGGATCACAAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgggttttataatttattgtcttgtctcttattttgcctttgctttctttcagTCTTTGATGTTGACTCTGAATAAGTTCAAGATTACTGAGGATCACAAGAAGTACTCAATCGATGAATTCGAACCCCTTCTTTTGTTCGGACTTAGCTGTG
                  ttgtcttgtctcttat  CT-rich tract
      ttttataatttattgt  TA-rich tract