1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cagttaactctgtttagtcatagtgtgaccagtggctatcattccttttgctctagctcctctgtaagcaggaaattaacaaccttttctgacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGGTCGTGGAGTTTGTTTATCCTCATATAACGGTGCTTTGATTATAACTTA
species | Zea mays |
transcript | GRMZM2G165926_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTGAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|18162870|gb|BM332709.1|BM332709
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|5525732|gb|AI861625.1|AI861625
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGAGAAGAACTGATG-AGCCATGTTCACGCTTC-AT GCGTACAAAGAAATEST: gi|71419000|gb|DR804613.1|DR804613
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAAT
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|37398277|gb|CF636450.1|CF636450
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATAT-GCCATGTTCACGCTTCCAT GCGTACAAAGAAATTGAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|60337128|gb|DN204101.1|DN204101
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|60353359|gb|DN220332.1|DN220332
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|211072582|gb|FL217263.1|FL217263
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|60347266|gb|DN214239.1|DN214239
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|37383110|gb|CF628537.1|CF628537
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTGAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|31664308|gb|CD573033.1|CD573033
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTC-CGCTTCCAT GCGTACAAAGAAATTAAAGACCGGTCTCC-TTGACTGCGTTTACTCTCTTGEST: gi|60349443|gb|DN216416.1|DN216416
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|60346958|gb|DN213931.1|DN213931
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|33097806|gb|CF057766.1|CF057766
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTGAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|18174967|gb|BM350355.1|BM350355
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGCTCACGCTTCCAT GCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|211072583|gb|FL217264.1|FL217264
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|60357544|gb|DN224517.1|DN224517
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTTTTGEST: gi|211442872|gb|FL468446.1|FL468446
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|60354620|gb|DN221593.1|DN221593
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTGAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|5847367|gb|AW000446.1|AW000446
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTGAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|5706125|gb|AI941901.1|AI941901
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTGAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|44901350|gb|CK827895.1|CK827895
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTGAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|60399456|gb|DN232268.1|DN232268
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGEST: gi|37383796|gb|CF628931.1|CF628931
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
EST: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCAT GCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
genomic: GACAAAACAGAAGACGATAAGAACTGATATAGCCATGTTCACGCTTCCATgtaagcgttc ... gacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTG
ttttgctctagctcctctgtaagcaggaaattaacaaccttttctgacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGGTCGTGGAGTTTGTTTATCCTCATATAACGGTGCTTTGATTATAACTTA
ttctgac putative branch site (score: 218)
ccttttctgacttc CT-rich tract
aaattaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagttaactctgtttagtcatagtgtgaccagtggctatcattccttttgctctagctcctctgtaagcaggaaattaacaaccttttctgacttcgcagGCGTACAAAGAAATTAAAGACCGGTCTCCATTGACTGCGTTTACTCTCTTGGTCGTGGAGTTTGTTTATCCTCATATAACGGTGCTTTGATTATAACTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - tctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaacc