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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acctctttcatcatagtagtagttgcatattacaattgtgactcaccaagtcaccattgctgtcattcccgtactgattccatatcattttgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGAAGTGATCTCCAGCTTATTTCCAACACATATTTATTAAGTCATCTTTGAC

Basic information

species Zea mays
transcript GRMZM2G165535_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165535_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os04g58580.1 (Oryza sativa), 3'ss of exon 10
----acctctttcatcatagtagtagttgcatattacaattgtgactcaccaagtcaccattgctgtcattcccgtactgattccatatcattttgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGAAGTGATCTCCAGCTTATTTCCAACACATATTTATTAAGTCATCTTTGAC
      ||  ||   |   ||   | |||| |  || |  | |      | ||  ||  |||| || |||  ||   |||||| |||  |||||  ||||||||||||||| ||   ||| |||||  |||| ||||||||||||||  ||||||||||| ||        |       |  |||||   |   |||   | ||
ctgagtcttgtttgccgaggttaaacttgctt--taaatcttttctgagctaatacatgattgatgccatcaccaagctgatttcat--catttatatttgcagTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6020771|gb|AW065579.1|AW065579
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|5871671|gb|AW018142.1|AW018142
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|78118501|gb|DV536885.1|DV536885
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|86471496|gb|DY237866.1|DY237866
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|85151824|gb|DW587525.1|DW587525
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATCCAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|40334667|gb|CK368737.1|CK368737
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|76011520|gb|DT938690.1|DT938690
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|5361143|gb|AI795758.1|AI795758
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|211038831|gb|FL468651.1|FL468651
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|71763428|gb|DR961365.1|DR961365
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|45846830|gb|CN070773.1|CN070773
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|32919709|gb|CF024521.1|CF024521
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|14700950|gb|BI233368.1|BI233368
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|148947648|gb|EC893128.2|EC893128
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|148943662|gb|EC888726.2|EC888726
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|5871104|gb|AW017545.1|AW017545
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|148947872|gb|EC893365.2|EC893365
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|40302745|gb|CK347132.1|CK347132
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|71299718|gb|DR785869.1|DR785869
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|32909183|gb|CF013995.1|CF013995
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|76280414|gb|DV019982.1|DV019982
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
EST: gi|32909184|gb|CF013996.1|CF013996
EST:     TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAG                         TTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA
genomic: TGGCAATGACTATGAGATATTTGAATCTGAAAGAACAGTTGGTCATACAGgtatgctatt ... tgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaagtcaccattgctgtcattcccgtactgattccatatcattttgatttgcagTTACCAGCCCCAGTGACACAGCTCAGCAATGCAGATCTCTCTTTTTGTCGAAGTGATCTCCAGCTTATTTCCAACACATATTTATTAAGTCATCTTTGAC
                                       tcatttt  CT-rich tract
                                    atatcattttgattt  TA-rich tract