Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctccaaaacaattgtccaaccccccaaagataaattgtcattgttgtgatggcatggggtttctgctagtctttacaacccactcgcttgttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTGCAGGCAATCTCCTTGCTAGCTCCTGTCATGGGTGCAGAAATCACCTGTC

Basic information

species Zea mays
transcript GRMZM2G164352_T03
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164352_T03 (Zea mays), 3'ss of exon 10
lower sequence: AT1G13320.1 (Arabidopsis thaliana), 3'ss of exon 10
tctccaaaacaattgtcca-accccccaaagataaattgtcattgttgtgatggcatggggtttctgctagtctttacaacccactcgcttgttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTGCAGGCAATCTCCTTGCTAGCTCCTGTCATGGGTGCAGAAATCACCTGTC
            ||||  | |   |  ||  ||| | | |  ||    |         |  |||  |||| |  |||            ||  ||   ||||| || |||| ||| ||||||||||||||| |||| || ||||||||||| |  ||| | ||  | || ||||| || |||||  | || ||||| ||| 
----------gtttgtgtagaaatcttaagcatatagtatgttttcaattcaaatcgagcattttagctattggttattgga-gtatatttacttgttcagGTTCTAGAGATGATTAACAACCCACACTATCTATATCGGATGACGATTCTTCGTGCAGTATCGCTTCTCGCTCCAGTAATGGGATCCGAGATCACATGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87156353|gb|DY401142.1|DY401142
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32847987|gb|CD987668.1|CD987668
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32929892|gb|CF034704.1|CF034704
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGCCGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|87157118|gb|DY401907.1|DY401907
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32933390|gb|CF038202.1|CF038202
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|16925494|gb|BM078562.1|BM078562
EST:     AGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: AGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|22546073|gb|BU098394.1|BU098394
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32847664|gb|CD987345.1|CD987345
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32939366|gb|CF044185.1|CF044185
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGGTCAACAACCCACACTATTTATACCGCATGACGATTCCG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|13557744|gb|BG549100.1|BG549100
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|33103273|gb|CF063233.1|CF063233
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|23357737|gb|BU645386.1|BU645386
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32928724|gb|CF033536.1|CF033536
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32846843|gb|CD986524.1|CD986524
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|31355734|gb|CD440091.1|CD440091
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|33102660|gb|CF062620.1|CF062620
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|13315895|gb|BG410243.1|BG410243
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgatggcatggggtttctgctagtctttacaacccactcgcttgttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTGCAGGCAATCTCCTTGCTAGCTCCTGTCATGGGTGCAGAAATCACCTGTC
                                      ctcgcttgttttccc  CT-rich tract
                           tttacaa  TA-rich tract