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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaacaatccacaacacacctggaacatcaaactgttggatactcatgtgttctgatgttcgtgcacagGGGATTTCAAAATCCGTTGGCGACTGGTACTTTGATCGAGCTGAGGTGAAGGCGGTCGACTGCCGCTATCCCTGCGACAACACTTGCCACCACATTATAT

Basic information

species Zea mays
transcript GRMZM2G164134_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164134_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g21630.1 (Oryza sativa), 3'ss of exon 8
-----------------------------------------------------------------------------------gtaaa-aaacaatccacaacacacctggaacatcaaactgttggatactcatgtgttctgatgttc----gtgcacagGGGATTTCAAAATCCGTTGGCGACTGGTACTTTGATCGAGCTGAGGTGAAGGCGGTCGACTGCCGCTATCCCTGCGACAACACTTGCCACCACATTATAT
                                                                                   | | |  || || |   |    |    | | |  ||| |  |   |  ||| || |  || |||||     ||  ||||| ||| |||| || ||||| ||||||||||||| ||||||||||||||||||  |||| |||| ||| ||||| ||||| || |||||| |||| ||||
gtactttccaccttgcttaattagtgtgtgtccatgtaattgttcagagctacaagagaaaactgcagacgttttcagtacttgcagacgaagaacctgaatgggattatgcataaaaaaatacttacttttca-gtttcatgctgttcttggatgtgcagGGAATTGCAAAGTCTGTTGGTGACTGGTACTTTGGTCGAGCTGAGGTGAAGGCCATCGATTGCCCCTACCCCTGTGACAAAACATGCCACAACATCATAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18170349|gb|BM340189.1|BM340189
EST:     TGGGCACCTGGAACACCAAACCAGGTGGCTCCCCCACCATTCAAAACAAG                         GGGATTTCAAAATCCGTTGGCGACTGGTACTTTGATCGAGCTGAGGTGAAG
genomic: TGGGCACCTGGAACACCAAACCAGGTGGCTCCCCCACCATTCAAAACAAGgtaaaaaaca ... tcgtgcacagGGGATTTCAAAATCCGTTGGCGACTGGTACTTTGATCGAGCTGAGGTGAAG
EST: gi|18172571|gb|BM347959.1|BM347959
EST:     TGGGCACCTGGAACACCAAACCAGGTGGCTCCCCCACCATTCAAAACAAG                         GGGATTTCAAAATCCGTTGGCGACTGGTACTTTGATCGAGCTGAGGTGAAG
genomic: TGGGCACCTGGAACACCAAACCAGGTGGCTCCCCCACCATTCAAAACAAGgtaaaaaaca ... tcgtgcacagGGGATTTCAAAATCCGTTGGCGACTGGTACTTTGATCGAGCTGAGGTGAAG
EST: gi|18161973|gb|BM331812.1|BM331812
EST:     TGGGCACCTGGAACACCAAACCAGGTGGCTCCCCCACCATTCAAAACAAG                         GGGATTTCAAAATCCGTTGGCGACTGGTACTTTGATCGAGCTGAGGTGAAG
genomic: TGGGCACCTGGAACACCAAACCAGGTGGCTCCCCCACCATTCAAAACAAGgtaaaaaaca ... tcgtgcacagGGGATTTCAAAATCCGTTGGCGACTGGTACTTTGATCGAGCTGAGGTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacacctggaacatcaaactgttggatactcatgtgttctgatgttcgtgcacagGGGATTTCAAAATCCGTTGGCGACTGGTACTTTGATCGAGCTGAGGTGAAGGCGGTCGACTGCCGCTATCCCTGCGACAACACTTGCCACCACATTATAT
                                    ttctgat  putative branch site (score: 3)