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gtaagtggctgtcaaacatgtttccgaattcacatctcacaaagcatataataccgataagtgacattctcacgtgatgcattgagtctatagtttgtaagaatgattttgtcttaccaaacatacgacttattgaattactaagacagccaaattttcctgcaagcagCTCCATACCAATGATGTTGATAATTTCAGACCCAACAAGAGGACCAGAACAG
species | Zea mays |
transcript | GRMZM2G163658_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACAAGCCAGATGAGTCACTAGATAAAAGAGTGTCAGACCATATAATAGCT CTCCATACCAATGATGTTGATAATTTCAGACCCAACAAGAGGACCAGAACAEST: gi|60355947|gb|DN222920.1|DN222920
genomic: ACAAGCCAGATGAGTCACTAGATAAAAGAGTGTCAGACCATATAATAGCTgtaagtggct ... ctgcaagcagCTCCATACCAATGATGTTGATAATTTCAGACCCAACAAGAGGACCAGAACA
EST: ACAAGCCAGATGAGTCACTAGATAAAAGAGTGTCAGACCATATAATAGCT CTCCATACCAATGATGTTGATAATTTCAGACCCAACAAGAGGACCAGAACAEST: gi|32942785|gb|CF047604.1|CF047604
genomic: ACAAGCCAGATGAGTCACTAGATAAAAGAGTGTCAGACCATATAATAGCTgtaagtggct ... ctgcaagcagCTCCATACCAATGATGTTGATAATTTCAGACCCAACAAGAGGACCAGAACA
EST: ACAAGCCAGATGAGTCACTAGATAAAAGAGTGTCAGACCATATAATAGCT CTCCATACCAATGATGTTGATAATTTCAGACCCAACAAGAGGACCAGAACAEST: gi|60339901|gb|DN206874.1|DN206874
genomic: ACAAGCCAGATGAGTCACTAGATAAAAGAGTGTCAGACCATATAATAGCTgtaagtggct ... ctgcaagcagCTCCATACCAATGATGTTGATAATTTCAGACCCAACAAGAGGACCAGAACA
EST: ACAAGCCAGATGAGTCACTAGATAAAAGAGTGTCAGACCATATAATAGCT CTCCATACCAATGATGTTGATAATTTCAGACCCAACAAGAGGACCAGAACAEST: gi|32857853|gb|CD997534.1|CD997534
genomic: ACAAGCCAGATGAGTCACTAGATAAAAGAGTGTCAGACCATATAATAGCTgtaagtggct ... ctgcaagcagCTCCATACCAATGATGTTGATAATTTCAGACCCAACAAGAGGACCAGAACA
EST: ACAAGCCAGATGAGTTACTAGATAAAAGAGTGTCAGACCATATAATAGCT CTCCATACCAATGATGGTGATAATTTCAAACCCAACAAGAGGACCAGAACAEST: gi|32942784|gb|CF047603.1|CF047603
genomic: ACAAGCCAGATGAGTCACTAGATAAAAGAGTGTCAGACCATATAATAGCTgtaagtggct ... ctgcaagcagCTCCATACCAATGATGTTGATAATTTCAGACCCAACAAGAGGACCAGAACA
EST: ACAAGCCAGATGAGTCACTAGATAAAAGAGTGTCAGACCATATAATAGCT CTCCATACCAATGATGTTGATAATTTCAGACCCAACAAGAGGACCAGAACA
genomic: ACAAGCCAGATGAGTCACTAGATAAAAGAGTGTCAGACCATATAATAGCTgtaagtggct ... ctgcaagcagCTCCATACCAATGATGTTGATAATTTCAGACCCAACAAGAGGACCAGAACA
taccaaacatacgacttattgaattactaagacagccaaattttcctgcaagcagCTCCATACCAATGATGTTGATAATTTCAGACCCAACAAGAGGACCAGAACAG
gtcttac putative branch site (score: 18)
ttttcctgc putative PPT
ttattgaattactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggctgtcaaacatgtttccgaattcacatctcacaaagcatataataccgataagtgacattctcacgtgatgcattgagtctatagtttgtaagaatgattttgtcttaccaaacatacgacttattgaattactaagacagccaaattttcctgcaagcagCTCCATACCAATGATGTTGATAATTTCAGACCCAACAAGAGGACCAGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA