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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggcatataagtttccatcctccattcaatctttgagctatattactatttaagaagctaatttccatattttattgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTTTCGATATTCTCTTCGTGAAGGTGATGATCCACAGCCACGGCCTGCCAGT

Basic information

species Zea mays
transcript GRMZM2G159369_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159369_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os05g06430.1 (Oryza sativa), 3'ss of exon 10
gtgggca-tataagtttccat-cctccattcaatctttgagctatattact-atttaagaagctaatttccatattttattgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTTTCGATATTCTCTTCGTGAAGGTGATGATCCACA-GCCACGGCCTGCCAGT-
||| |||  | ||||||| || |||| ||||| | |       |||||||| | |  |||| || ||||||||  || ||  |||   |||| ||||||||||||||||| ||||||||| || | ||||||||||| |||||||  ||||| || | ||||   ||  ||||   || || |  || | | 
gtgagcaacaaaagtttctattcctcaattcactttggacatcatattacttaatctagaatctgatttccatgcttcatcatatgacagTCGATCAGTCCTTCCAAAGCCGATGAATTCGTCATCAAGAAGAACATCCTTTCGACTTTCTCCTCTTAAAGG--GTGTCCCACGTACCCCGACGAGCAATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60400615|gb|DN233422.1|DN233422
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|60349176|gb|DN216149.1|DN216149
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|60355512|gb|DN222485.1|DN222485
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|32945558|gb|CF050377.1|CF050377
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|33101695|gb|CF061655.1|CF061655
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|18177252|gb|BM378462.1|BM378462
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|241994843|gb|GR421187.1|GR421187
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|50323733|gb|CO518859.1|CO518859
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|5901141|gb|AW042241.1|AW042241
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|6865233|gb|AW360583.1|AW360583
EST:     CTGGCTNCACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|148932685|gb|EC876639.2|EC876639
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|86466435|gb|DY232805.1|DY232805
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|4647206|gb|AI622281.1|AI622281
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|60396463|gb|DN229332.1|DN229332
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|32857597|gb|CD997278.1|CD997278
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|6227253|gb|AW155852.1|AW155852
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|211059073|gb|FL239922.1|FL239922
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|5928651|gb|AW056048.1|AW056048
EST:     TGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: TGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|60350336|gb|DN217309.1|DN217309
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|37380832|gb|CF627255.1|CF627255
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|60399092|gb|DN231906.1|DN231906
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|24934298|gb|CA452516.1|CA452516
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|211474733|gb|FL432049.1|FL432049
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCMCCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|78084676|gb|DV513069.1|DV513069
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|32867151|gb|CF006833.1|CF006833
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|24767522|gb|CA402664.1|CA402664
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|21809934|gb|BQ668252.1|BQ668252
EST:     CTGACTACCCTAAGAAGGAGACTGAGAGGCTTCGCCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|4646531|gb|AI491677.2|AI491677
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|67039449|gb|CO465704.1|CO465704
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|37379835|gb|CF626683.1|CF626683
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|4681139|gb|AI629809.1|AI629809
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|32940600|gb|CF045419.1|CF045419
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|78545093|gb|DV622591.1|DV622591
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|31355506|gb|CD439863.1|CD439863
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|31558598|gb|CD527810.1|CD527810
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|33091270|gb|CF051264.1|CF051264
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|71326463|gb|DR799911.1|DR799911
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|211059072|gb|FL239921.1|FL239921
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|60356885|gb|DN223858.1|DN223858
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|148961931|gb|EE012723.2|EE012723
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|6022466|gb|AW067499.1|AW067499
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|13177820|gb|BG349168.1|BG349168
EST:     CGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|37388199|gb|CF631306.1|CF631306
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|20513042|gb|BQ280228.1|BQ280228
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|101386448|gb|EB815241.1|EB815241
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|5871206|gb|AW017677.1|AW017677
EST:     GGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: GGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|32916349|gb|CF021161.1|CF021161
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGGGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|211497907|gb|FK991939.1|FK991939
EST:     TGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGNAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTA
genomic: TGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGG-AGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTA
EST: gi|14244794|gb|BG842732.2|BG842732
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|211217629|gb|FL066544.1|FL066544
EST:     CTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|60342632|gb|DN209605.1|DN209605
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|14244876|gb|BG842814.2|BG842814
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|24763724|gb|CA398895.1|CA398895
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCCCCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|6020864|gb|AW065792.1|AW065792
EST:     GGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: GGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|211217628|gb|FL066543.1|FL066543
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|67024988|gb|CO453737.1|CO453737
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|40336546|gb|CK370616.1|CK370616
EST:     CTGACTACACTAAGAAAGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTA
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTA
EST: gi|32934912|gb|CF039724.1|CF039724
EST:     CTGACTACACTAAGAAGGGGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|32935845|gb|CF040657.1|CF040657
EST:     ATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: ATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|211217627|gb|FL066542.1|FL066542
EST:     ATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: ATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|9254367|gb|BE344835.1|BE344835
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|149096331|gb|EE182050.2|EE182050
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|14244939|gb|BG842877.2|BG842877
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|37393543|gb|CF634037.1|CF634037
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|21828690|gb|BQ703374.1|BQ703374
EST:     CTGACTACCCTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|6102035|gb|AW126505.1|AW126505
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|60343927|gb|DN210900.1|DN210900
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|37397302|gb|CF635947.1|CF635947
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|60358667|gb|DN225640.1|DN225640
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|32862901|gb|CF002583.1|CF002583
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
EST: gi|213192265|gb|FM195988.1|FM195988
EST:     CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAG                         TCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT
genomic: CTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 275

GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTTTCGATATTCTCTTCGTGAAGGTGATGATCCACAGCCACGGCCTGCCAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 293

GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTTTCGATATTCTCTTCGTGAAGGTGATGATCCACAGCCACGGCCTGCCAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 349

GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTTTCGATATTCTCTTCGTGAAGGTGATGATCCACAGCCACGGCCTGCCAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 412

GCATGGAAAGATATATGTGACAGCTGCAAAGAAGATCATAGACAAGGGCTCTGACTACACTAAGAAGGAGACTGAGAGGCTTCACCGCATGCTGGAGAAGgtgggcatat ... tgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTTTCGATATTCTCTTCGTGAAGGTGATGATCCACAGCCACGGCCTGCCAGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgagctatattactatttaagaagctaatttccatattttattgtattgtagTCAATCAGTCCTTCCAAAGCTGATGAATTCATCGTTAAGAAGAACATTCTTTCGATATTCTCTTCGTGAAGGTGATGATCCACAGCCACGGCCTGCCAGT
                         agctaat  putative branch site (score: 412)
                                       ttttatt  putative PPT
                            taatttccatatttta  TA-rich tract