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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataagatcatgacctgacctgaactaacgtattgattttcaaattatgcggggcttgatttatgtcatgatactcaaatgttttgcttgttctcctgaagCTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAATTGGCCCACTCTTCCATAACATTGCCCTGCAACAATACATCCTACTTTG

Basic information

species Zea mays
transcript GRMZM2G158562_T03
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158562_T03 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g53600.1 (Oryza sativa), 3'ss of exon 12
--ataagatcatgacctgacctgaactaacgtattgattttcaaat-tatgcggggcttgatt-tatgtcatgatactcaaatgttttgcttgttctc-ctgaagCTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAATTGGCCCACTCTTCCATAACATTGCCCTGCAACAATACATCCTACTTTG
   |    || | | |  | ||    || |||| |   ||     | |||  |  | | | || | | ||   ||  ||  || ||| | || || |  | ||||| |   | ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| ||||| ||||| || ||||| ||||||||||| ||   
cctttcattcttcatc--aactaggttatcgtactagcttcttgttgtatatgatgttgggttgtttatccccatgatcttatatttggttttttttggcagAAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACCAAATAGGCCCACTGTTCCACAACATCGCGCTGCAGCAATACATCCTGCT---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148933929|gb|EC877913.2|EC877913
EST:     ACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTG                         CTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
genomic: ACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTGgtaagaatca ... tctcctgaagCTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
EST: gi|71760301|gb|DR958238.1|DR958238
EST:     TGCCTGCAGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTG                         CTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
genomic: TGCCTGCAGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTGgtaagaatca ... tctcctgaagCTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
EST: gi|37393390|gb|CF633958.1|CF633958
EST:     TGCCTGCAGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTG                         CTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
genomic: TGCCTGCAGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTGgtaagaatca ... tctcctgaagCTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
EST: gi|61734583|gb|AB194873.1|AB194873
EST:     AGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTG                         CTGTGGACTATGCAAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
genomic: AGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTGgtaagaatca ... tctcctgaagCTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
EST: gi|74233985|gb|DT641899.1|DT641899
EST:     TGCCTGCAGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTG                         CTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
genomic: TGCCTGCAGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTGgtaagaatca ... tctcctgaagCTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
EST: gi|78115563|gb|DV533951.1|DV533951
EST:     AAAAAGTCTTCCTCTG                         CTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
genomic: AAAAAGTCTTCCTCTGgtaagaatca ... tctcctgaagCTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
EST: gi|60338663|gb|DN205636.1|DN205636
EST:     TGCCTGCAGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTG                         CTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
genomic: TGCCTGCAGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTGgtaagaatca ... tctcctgaagCTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
EST: gi|71433946|gb|DR814996.1|DR814996
EST:     TGCCTGCAGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTG                         CTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
genomic: TGCCTGCAGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTGgtaagaatca ... tctcctgaagCTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
EST: gi|32917284|gb|CF022096.1|CF022096
EST:     TGCCTGCAGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTG                         CTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
genomic: TGCCTGCAGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTGgtaagaatca ... tctcctgaagCTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
EST: gi|211198491|gb|FL469036.1|FL469036
EST:     GTGCACCGCGAAAAAGTCTTCCTCTG                         CTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
genomic: GTGCACCGCGAAAAAGTCTTCCTCTGgtaagaatca ... tctcctgaagCTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
EST: gi|67023541|gb|CO452290.1|CO452290
EST:     TGCCTGCAGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTG                         CTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
genomic: TGCCTGCAGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTGgtaagaatca ... tctcctgaagCTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
EST: gi|211090140|gb|FL283402.1|FL283402
EST:     TGCCTGCAGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTG                         CTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
genomic: TGCCTGCAGCACCAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTGgtaagaatca ... tctcctgaagCTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
EST: gi|213188231|gb|FM181944.1|FM181944
EST:     CAGTTCATATGGGTGCACCGCGAAAAAG-CTTCCTCTG                         CTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA
genomic: CAGTTCATATGGGTGCACCGCGAAAAAGTCTTCCTCTGgtaagaatca ... tctcctgaagCTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcggggcttgatttatgtcatgatactcaaatgttttgcttgttctcctgaagCTGTGGACTATGCGAAGTTTGGATTTGATTTTATACAACAGAGCAACCAAATTGGCCCACTCTTCCATAACATTGCCCTGCAACAATACATCCTACTTTG
       gcttgat  putative branch site (score: 5)
                                   ttttgcttgttctcct  putative PPT
         ttgatttat  TA-rich tract