1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtttgtctgtgacactgtcccttgctggatctggactgctctagccttacttttgttactcctactaattctcattacactttaaattcaactgtttcagCTGCTCCTGCTCTGCGCCTGAAGAGTTGACCCCAAAAGAGTTGCAAAGTGTTATGCAGCAGTATGAAG
species | Zea mays |
transcript | GRMZM2G158162_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTGTTGCATCCAAATGGACATGCACCGACAACTCATGGGACCCAAAATG CTGCTCCTGCTCTGCGCCTGAAGAGTTGACCCCAAAAGAGTTGCAAAGTGTEST: gi|60397624|gb|DN230440.1|DN230440
genomic: ATTGTTGCATCCAAATGGACATGCACCGACAACTCATGGGACCCAAAATGgtaatgctat ... actgtttcagCTGCTCCTGCTCTGCGCCTGAAGAGTTGACCCCAAAAGAGTTGCAAAGTGT
EST: ATTGTTGCATCCAAATGGACATGCACCGACAACTCATGGGACCCAAAATG CTGCTCCTGCTCTGCGCCTGAAGAGTTGACCCCAAAAGAGTTGCAAAGTGTEST: gi|67034443|gb|CO462993.1|CO462993
genomic: ATTGTTGCATCCAAATGGACATGCACCGACAACTCATGGGACCCAAAATGgtaatgctat ... actgtttcagCTGCTCCTGCTCTGCGCCTGAAGAGTTGACCCCAAAAGAGTTGCAAAGTGT
EST: AT-GNTGCATCCAAATGGACATGCGCCGACAACTCATGGGACCCAAA-TG CTGCTCCTGCTCTGCGCCTG
genomic: ATTGTTGCATCCAAATGGACATGCACCGACAACTCATGGGACCCAAAATGgtaatgctat ... actgtttcagCTGCTCCTGCTCTGCGCCTG
cttacttttgttactcctactaattctcattacactttaaattcaactgtttcagCTGCTCCTGCTCTGCGCCTGAAGAGTTGACCCCAAAAGAGTTGCAAAGTGTTATGCAGCAGTATGAAG
tactaat putative branch site (score: 518)
ctgtttc putative PPT
attacactttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtctgtgacactgtcccttgctggatctggactgctctagccttacttttgttactcctactaattctcattacactttaaattcaactgtttcagCTGCTCCTGCTCTGCGCCTGAAGAGTTGACCCCAAAAGAGTTGCAAAGTGTTATGCAGCAGTATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - cttgctg
- - - - - - - - - - - - - - - - - actgctc