1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...gaagttctttgtgtgtatacatagtgaagtaatactatatatatagttttagtgcacatcttgcctctttccacaggaaactaatttgacattcaattagGTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCAGGACTTGGGAGATATCCTCCATTCAAGCGTGAG
species | Zea mays |
transcript | GRMZM2G157462_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAG GTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCAEST: gi|9254689|gb|BE345157.1|BE345157
genomic: AAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAGgtacgcccca ... attcaattagGTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCA
EST: AAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAG GTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCAEST: gi|211286763|gb|FK982429.1|FK982429
genomic: AAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAGgtacgcccca ... attcaattagGTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCA
EST: AAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAG GTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCGEST: gi|87155357|gb|DY400146.1|DY400146
genomic: AAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAGgtacgcccca ... attcaattagGTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCA
EST: AAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAG GTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCAEST: gi|30306992|gb|CD001665.1|CD001665
genomic: AAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAGgtacgcccca ... attcaattagGTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCA
EST: AAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAG GTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCAEST: gi|26557231|gb|CA829466.1|CA829466
genomic: AAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAGgtacgcccca ... attcaattagGTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCA
EST: AATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAAG GT-CATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCEST: gi|22472855|gb|BU037335.1|BU037335
genomic: AATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGA-Ggtacgcccca ... attcaattagGTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACC
EST: AAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAG GTTCATCGGGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCAEST: gi|211132359|gb|FK982426.1|FK982426
genomic: AAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAGgtacgcccca ... attcaattagGTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCA
EST: AAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAG GTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCAEST: gi|31361304|gb|CD445661.1|CD445661
genomic: AAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAGgtacgcccca ... attcaattagGTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCA
EST: AAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAG GTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCA
genomic: AAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAGgtacgcccca ... attcaattagGTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCA
gttttagtgcacatcttgcctctttccacaggaaactaatttgacattcaattagGTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCAGGACTTGGGAGATATCCTCCATTCAAGCGTGAG
aaactaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagttctttgtgtgtatacatagtgaagtaatactatatatatagttttagtgcacatcttgcctctttccacaggaaactaatttgacattcaattagGTTCATCGTGTATTGTTAGACATAGTCAATGCTTCCGCAAATGCCACACCAGGACTTGGGAGATATCCTCCATTCAAGCGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa