1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtttgagccttcttctggatccagccctttctttgttaccccccttgtttccaagaaaatagctggccttgttctgagggtataaccaaaactgcatcttattttgtggtagATTGACAGCAACACTGATGGGCTCGTGGACTTCAAGGAGTTTGTTGCGGCAACTCTCCATATCCACCAGATGGCGGAGCTCGACTCAGAAAGGTGGGGCA
species | Zea mays |
transcript | GRMZM2G157068_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATCTTCCCTGGAGATTGAAGGGTCCCCGTGTGCTGGAGATTATTCAAGCA ATTGACAGCAACACTGATGGGCTCGTGGACTTCAAGGAGTTTGTTGCGGCAEST: gi|71765451|gb|DR963388.1|DR963388
genomic: ATCTTCCCTGGAGATTGAAGGGTCCCCGTGTGCTGGAGATTATTCAAGCAgtaagtttga ... tttgtggtagATTGACAGCAACACTGATGGGCTCGTGGACTTCAAGGAGTTTGTTGCGGCA
EST: ATCTTCCCTGGAGATTGAAGGGTCCCCGTGTGCTGGAGATTATTCAAGCA ATTGACAGCAACACTGATGGGCTCGTGGACTTCAAGGAGTTTGTTGCGGCAEST: gi|113704348|gb|EE681852.1|EE681852
genomic: ATCTTCCCTGGAGATTGAAGGGTCCCCGTGTGCTGGAGATTATTCAAGCAgtaagtttga ... tttgtggtagATTGACAGCAACACTGATGGGCTCGTGGACTTCAAGGAGTTTGTTGCGGCA
EST: ATCTTCCCTGGAGATTGAAGGGTCCCCGTGTGCTGGAGATTATTCAAGCA ATTGACAGCAACACTGATGGGCTCGTGGACTTCAAGGAGTTTGTTGCGGCAEST: gi|108954222|gb|EC365062.1|EC365062
genomic: ATCTTCCCTGGAGATTGAAGGGTCCCCGTGTGCTGGAGATTATTCAAGCAgtaagtttga ... tttgtggtagATTGACAGCAACACTGATGGGCTCGTGGACTTCAAGGAGTTTGTTGCGGCA
EST: ATCTTCCCTGGAGATTGAAGGGTCCCCGTGTGCTGGAGATTATTCAAGCA ATTGACAGCAACACTGATGGGCTCGGTGGACTTCAAGGAGTTTGTTGCGGCEST: gi|78113085|gb|DV531479.1|DV531479
genomic: ATCTTCCCTGGAGATTGAAGGGTCCCCGTGTGCTGGAGATTATTCAAGCAgtaagtttga ... tttgtggtagATTGACAGCAACACTGATGGGCTCG-TGGACTTCAAGGAGTTTGTTGCGGC
EST: ATCTTCCCTGGAGATTGAAGGGTCCCCGTGTGCTGGAGATTATTCAAGCA ATTGACAGCAACACTGATGGGCTCGTGGACTTCAAGGAGTTTGTTGCGGCAEST: gi|149082401|gb|EE171588.2|EE171588
genomic: ATCTTCCCTGGAGATTGAAGGGTCCCCGTGTGCTGGAGATTATTCAAGCAgtaagtttga ... tttgtggtagATTGACAGCAACACTGATGGGCTCGTGGACTTCAAGGAGTTTGTTGCGGCA
EST: ATCTTCCCTGGAGATTGAAGGGTCCCCGTGTGCTGGAGATTATTCAAGCA ATTGACAGCAACACTGATGGGCTCGTGGACTTCAAGGAGTTTGTTGCGGCAEST: gi|71330882|gb|DR802236.1|DR802236
genomic: ATCTTCCCTGGAGATTGAAGGGTCCCCGTGTGCTGGAGATTATTCAAGCAgtaagtttga ... tttgtggtagATTGACAGCAACACTGATGGGCTCGTGGACTTCAAGGAGTTTGTTGCGGCA
EST: ATCTTCCCTGGAGATTGAAGGGTCCCCGTGTGCTGGAGATTATTCAAGCA ATTGACAGCAACACTGATGGGCTCGTGGACTTCAAGGAGTTTGTTGCGGCA
genomic: ATCTTCCCTGGAGATTGAAGGGTCCCCGTGTGCTGGAGATTATTCAAGCAgtaagtttga ... tttgtggtagATTGACAGCAACACTGATGGGCTCGTGGACTTCAAGGAGTTTGTTGCGGCA
aatagctggccttgttctgagggtataaccaaaactgcatcttattttgtggtagATTGACAGCAACACTGATGGGCTCGTGGACTTCAAGGAGTTTGTTGCGGCAACTCTCCATATCCACCAGATGGCGGAGCTCGACTCAGAAAGGTGGGGCA
gtataac putative branch site (score: 65)
tcttatttt putative PPT
atcttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttgagccttcttctggatccagccctttctttgttaccccccttgtttccaagaaaatagctggccttgttctgagggtataaccaaaactgcatcttattttgtggtagATTGACAGCAACACTGATGGGCTCGTGGACTTCAAGGAGTTTGTTGCGGCAACTCTCCATATCCACCAGATGGCGGAGCTCGACTCAGAAAGGTGGGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT