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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catattggccaatttcgacttgtttttaagattattattaggataaacaactaagttagcttgggttacgttgactgattctttatgcatgcttcaccagGTTCTTTCTCTTTGAGAAATATACCGGCAACATTGGGAGGACTTAAAACTCGAATTGTTGCATGGTCAACATTCGTAATCCTGACCTTGTCAGCATTCCT

Basic information

species Zea mays
transcript GRMZM2G157043_T02
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211359375|gb|FL212476.1|FL212476
EST:     CATGGATGCATGCTCCAATCCAAGAAACAGCTCGACACCTTCCARCTCAG                         GTTCTTTCTCTTTGAGAAATATACCGGCAACATTGGGAGGACTTAAAACTC
genomic: CATGGATGCATGCTCCAATCCAAGAAACAGCTCGACACCTTCCAGCTCAGgtctttatgt ... gcttcaccagGTTCTTTCTCTTTGAGAAATATACCGGCAACATTGGGAGGACTTAAAACTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaactaagttagcttgggttacgttgactgattctttatgcatgcttcaccagGTTCTTTCTCTTTGAGAAATATACCGGCAACATTGGGAGGACTTAAAACTCGAATTGTTGCATGGTCAACATTCGTAATCCTGACCTTGTCAGCATTCCT
                           gactgat  putative branch site (score: 3)
                                              cttcacc  putative PPT
                                attctttat  TA-rich tract