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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaacatatgatttgaaacgttattcaccccttcctagtattcatacattttgagactgcactttcttttcacatgtcaaacagGGAAGTTAGATACTAAGAGTTGGGACAGCAGCACTGTTCATAATTTATATTCTCCAGTTAGACCGCAACACGATAAATCACAACATGGCTTCTCTGTGAA

Basic information

species Zea mays
transcript GRMZM2G156956_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156956_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os05g01240.2 (Oryza sativa), 3'ss of exon 9
gtatgtaacatatgatttgaaacgttattcaccccttcctagtattcatacattttgagactgcactttcttttcacatgtcaaa-cagGGAAGTTAGATACTAAGAGTTGGGACAGCAGCACTGTTCATAATTTATATTCTCCAGTTAGACCGCAACACGATAAATCACAACATGGCTTCTCTGTGAA
   |  || |||| | ||| |   |  ||      ||  |  |  | |   ||||||            | |||  |||| |||| |||| ||||| |  || ||  ||  ||||| |||||||||||||||||||| |||||||||||  |  |||   || |   ||   ||  || |||||  || 
--gtacaatatattacttgga-tatattttggaaattgttgatcattacttattttg-----------ccctttttcatgccaaaacagGAAAGTTGGGCACCAAATGTCAGGACAACAGCACTGTTCATAATTTATTTTCTCCAGTTAACCAACAATTGGAGAGCCCAACCCAGTGCATCTCTACGAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttcctagtattcatacattttgagactgcactttcttttcacatgtcaaacagGGAAGTTAGATACTAAGAGTTGGGACAGCAGCACTGTTCATAATTTATATTCTCCAGTTAGACCGCAACACGATAAATCACAACATGGCTTCTCTGTGAA
                                ctttcttttcacat  CT-rich tract
         tattcatacatttt  TA-rich tract