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...aaaaatatttctggagaactttttttttgcttatgttcattcagacatttgatcccatgcttctctccctaacttgtcatgtctttcatttgtattttagCCTGTTGTTCGTGCTGCAGCAATTGATCACAATCCTGGAGGGGGCCACTGGCTACATTCAGGTCTTTCCCCGCAG
species | Zea mays |
transcript | GRMZM2G156638_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTACCTGAGACCACAAGAATT CCTGTTGTTCGTGCTGCAGCAATTGATCACAATCCTGGAGGGGGCCACTGGEST: gi|32933257|gb|CF038069.1|CF038069
genomic: GTACCTGAGACCACAAGAATTgtgagtatgg ... tgtattttagCCTGTTGTTCGTGCTGCAGCAATTGATCACAATCCTGGAGGGGGCCACTGG
EST: ACCTGAGACCACAAGAATT CCTGTTGTTCGTGCTGCAGCAATTGATCACAATCCTGGAGGGGGCCACTGGEST: gi|91055894|gb|EB166312.1|EB166312
genomic: ACCTGAGACCACAAGAATTgtgagtatgg ... tgtattttagCCTGTTGTTCGTGCTGCAGCAATTGATCACAATCCTGGAGGGGGCCACTGG
EST: GCAAATCGTTCACCGGTCCATATGAACCTGTACCTGAGACCACAAGAATT CCTGTTGTTCGTGCTGCAGCAATTGATCACAATCCTGGAGGGGGCCACTGG
genomic: GCAAATCGTTCACCGGTCCATATGAACCTGTACCTGAGACCACAAGAATTgtgagtatgg ... tgtattttagCCTGTTGTTCGTGCTGCAGCAATTGATCACAATCCTGGAGGGGGCCACTGG
catttgatcccatgcttctctccctaacttgtcatgtctttcatttgtattttagCCTGTTGTTCGTGCTGCAGCAATTGATCACAATCCTGGAGGGGGCCACTGGCTACATTCAGGTCTTTCCCCGCAG
ccctaac putative branch site (score: 93)
tctttcattt putative PPT
tttcatttgtatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaatatttctggagaactttttttttgcttatgttcattcagacatttgatcccatgcttctctccctaacttgtcatgtctttcatttgtattttagCCTGTTGTTCGTGCTGCAGCAATTGATCACAATCCTGGAGGGGGCCACTGGCTACATTCAGGTCTTTCCCCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
aaaaata
- - - - - - - - - - - - ttttgct
- - - - - - - - - - - - - - - - - - -cattcag
- - - - - - - - - - - - - - - - - - - - - - acatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatt