Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcattgaagtccaattttgtttgtgcaataaaagcagggaggcatttatctataacatttcccttttatctttctgtagAGATTTTTCTTACAACCAGCTGTCAGGCAACTTTCCTTCTTGGACTACTCAGAACAATTTGCAACTGTGAGTATTGATTTCTGAAACTTCAAATGACCAC

Basic information

species Zea mays
transcript GRMZM2G155837_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155837_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os04g52614.1 (Oryza sativa), 3'ss of exon 10
------------gtatgtcattgaagtccaattttgtttgtgcaataaaagcagggaggcatttatctataac----atttcccttttatctttctgtagAGATTTTTCTTACAACCAGCTGTCAGGCAACTTTCCTTCTTGGACTACTCAGAACAATTTGCAACTGTGAGTATTGATTTCTGAAACTTCAAATGACCAC
            ||||||   |  | ||||| || ||||   ||| | ||  |  |    |||||| | |||     |||| || |||  || | |||||||||||||||||||||||||| ||||| ||||||||| ||||| ||| | | || ||||| ||| |                                  
actttcaactttgtatgttcatacaatccaagttcgttttaacaacataatgaatgtttaatttatttctaatgatgatttgccatttccctgtttgtagAGATTTTTCTTACAACCAGCTCTCAGGAAACTTTCCTCCTTGGGCTAGTGATAAAAATTTACAATT----------------------------------

upper sequence: GRMZM2G155837_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os04g52630.1 (Oryza sativa), 3'ss of exon 11
---------gtatgtcattgaagtccaattttgtttgtgcaataaaa-gcagggaggcatttatct-----ataac-atttcccttttatctttctgtagAGATTTTTCTTACAACCAGCTGTCAGGCAACTTTCCTTCTTGGACTACTCAGAACAATTTGCAACTGTGAGTATTGATTTCTGAAACTTCAAATGACCAC
         ||||||   |    || || ||||| ||  ||| |||| | || |  |  ||| | |     || |  ||||    | |  || | || ||||||||||||||||||||||| ||||| || |||||||||||| | | | |||| ||||| ||| |                                  
tacaactttgtatgttcatatgatcaaaatttgtctgaacaacaaaatgaagagttgttttttttttcctaatgatgatttggtatctccctgtttgcagAGATTTTTCTTACAACCAGCTCTCAGGAAATTTTCCTTCTTGGGCAAATGAGAAGAATTTACAATT----------------------------------

upper sequence: GRMZM2G155837_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os04g52640.1 (Oryza sativa), 3'ss of exon 13
gtatgtcattgaagtccaattttgtttgtgcaataaaagcagggaggca-tttatctataac----atttcccttttatctttctgtagAGATTTTTCTTACAACCAGCTGTCAGGCAACTTTCCTTCTTGGACTACTCAGAACAATTTGCAACTGTGAGTATTGATTTCTGAAACTTCAAATGACCAC
|||||    ||   || |  ||| ||||  ||| ||||| |||     | ||||||| |||     ||||  | |||   |||||| ||||||||||||||||||||||| ||||| || || |||| ||||  || | || |  |||||||| |                                  
gtatgcatatgtgatcta--tttatttgaacaacaaaaggaggtgtttaatttatctctaatgacaatttggcattttaatttctgcagAGATTTTTCTTACAACCAGCTTTCAGGAAATTTCCCTTTTTGGGTTAGTGAGGAAGATTTGCAATT----------------------------------

upper sequence: GRMZM2G155837_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os04g52606.2 (Oryza sativa), 3'ss of exon 12
gtatgtcattgaagtccaattttgtttgtgcaataaaagcagggaggcatttatcta-taac-atttcccttttatctttctgtagAGATTTTTCTTACAACCAGCTGTCAGGCAACTTTCCTTCTTGGACTACTCAGAACAATTTGCAACTGTGAGTATTGATTTCTGAAACTTCAAATGACCAC
||||||   |    | ||  ||| ||    ||| ||||   |   |   | | |||| | |  ||||  | |||   |||||| ||||||||||||||||||||||| |||||  |  | |||||||||  || |  |||  |||| ||| |                                  
gtatgttcatatgattca--tttattgtaacaacaaaatgtgtttgatttatttctaatgatgatttggcattttattttctgcagAGATTTTTCTTACAACCAGCTTTCAGGATATCTCCCTTCTTGGGTTAGTGGGAAAGATTTACAATT----------------------------------

upper sequence: GRMZM2G155837_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os04g52600.1 (Oryza sativa), 3'ss of exon 13
gtatgtcattgaagtccaattttgtttgtgcaataaaagcagg----gaggcatttatctataacatttcccttttatctttctg----tagAGATTTTTCTTACAACCAGCTGTCAGGCAACTTTCCTTCTTGGACTACTCAGAACAATTTGCAACTGTGAGTATTGATTTCTGAAACTTCAAATGACCAC
||||||   |    ||||| ||||||||   || |  |  |      |    |||||| | ||||  |   ||   ||||  |||     ||||||||||||||||||||||| ||||| || |||||| | ||| ||| |  ||| ||||| ||| |                                  
gtatgttcatatgatccaagtttgtttgaataacatgatgaatatttgtttaatttatttctaacgatgatctggcatctccctgatctcagAGATTTTTCTTACAACCAGCTCTCAGGAAATTTTCCTCCATGGGCTAGTGGGAAAAATTTACAATT----------------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaataaaagcagggaggcatttatctataacatttcccttttatctttctgtagAGATTTTTCTTACAACCAGCTGTCAGGCAACTTTCCTTCTTGGACTACTCAGAACAATTTGCAACTGTGAGTATTGATTTCTGAAACTTCAAATGACCAC
                         ctataac  putative branch site (score: 3)
                               catttcccttttatct  CT-rich tract
                   atttatctataacatt  TA-rich tract