1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gttgtgatacgttgacatgacagttgctttgttcaaaacctaatgctgttgtgatatgtacttctgcctgtgttgatgaacatccccaacaaatgaatttcctgtactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTATTTGCATTGGAATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAG
species | Zea mays |
transcript | GRMZM2G153704_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTTAC-TATCTGAG ATCTCACCAACTGAAATTCGTGCAACACTTGGTACCGTTAATCAACTTTTTEST: gi|78075828|gb|DV504262.1|DV504262
genomic: AATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTT-ACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG ATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTEST: gi|211050167|gb|FL124868.1|FL124868
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG ATCTCACCAACTGAAATTCGT-GAACACTTGGTACCGTTAATCAACTTTTTEST: gi|78078828|gb|DV507240.1|DV507240
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG ATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTEST: gi|149083192|gb|EE172463.2|EE172463
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG ATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTEST: gi|148981335|gb|EE027589.2|EE027589
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG ATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTEST: gi|32847646|gb|CD987327.1|CD987327
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: ACCCCTTTACATATCTGAG ATATCACCAACTGAAATTCGTGGAACACTTGGTTCCGTTAATCAACTTTTTEST: gi|149082633|gb|EE171834.2|EE171834
genomic: ACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG ATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTEST: gi|148953947|gb|EC899333.2|EC899333
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG ATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
acttctgcctgtgttgatgaacatccccaacaaatgaatttcctgtactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTATTTGCATTGGAATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAG
tgttgat putative branch site (score: 4)
tttcctgt putative PPT
aaatgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtgatacgttgacatgacagttgctttgttcaaaacctaatgctgttgtgatatgtacttctgcctgtgttgatgaacatccccaacaaatgaatttcctgtactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTATTTGCATTGGAATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA