1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attttctctgtcaaatatccaactgtacctgcaatcgtctgtttgtaatgatttttcccctgttacatggctaactattatgatttttaattatattcagGGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATACGTAGGAAG
species | Zea mays |
transcript | GRMZM2G153434_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAATATGCAAAGAGGCCACGTTGAG GGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATACEST: gi|89106847|gb|DY577064.1|DY577064
genomic: AAATATGCAAAGAGGCCACGTTGAGgcaagtgtac ... ttatattcagGGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATAC
EST: AAATATGCAAAGAGGCCACGTTGAG GGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCA-CATACEST: gi|89106878|gb|DY577095.1|DY577095
genomic: AAATATGCAAAGAGGCCACGTTGAGgcaagtgtac ... ttatattcagGGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATAC
EST: AAATATGCAAAGAGGCCACGTTGAG GGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCA-CATAC
genomic: AAATATGCAAAGAGGCCACGTTGAGgcaagtgtac ... ttatattcagGGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATAC
taatgatttttcccctgttacatggctaactattatgatttttaattatattcagGGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATACGTAGGAAG
taactattatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttctctgtcaaatatccaactgtacctgcaatcgtctgtttgtaatgatttttcccctgttacatggctaactattatgatttttaattatattcagGGGCTGAATCCATTGATGTTTACCTTTGCTTTACTGGGAAATTCAACATACGTAGGAAG
- - - - - - - - - - - - - acctgca
- - - - - - - - - - - - - - - - - - - -tgtttgt