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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttagataaaccttgtgttctgtaggacagaacatatatattgttattgctcagttaccaccacaccactcataatttgttatgaatattttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAATGCAATGGTACCTCGGCCCCATGTTTTTTATTTGCCAGGAAGTTCTCCT

Basic information

species Zea mays
transcript GRMZM2G152057_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152057_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g50040.1 (Oryza sativa), 3'ss of exon 10
--cttagataaaccttgtgttctgtaggacagaacatatatattgttattgctcagttaccaccacaccactcataatttgttatgaatattttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAATGCAATGGTACCTCGGCCCCATGTTTTTTATTTGCCAGGAAGTTCTCCT
     ||  | ||   |  | ||||||  ||| || | ||  ||  ||| || |  |   |     |    |  | | ||    |     |   ||||  || | ||||||||||| || ||||| ||||||||||| || ||||||||||||||||||  ||| || |  ||||||||  |||||||||||||||||||||
aataaagtcagacaccgcatcctgtagtgcaggacctctacctt-ctatggcacgttattctgttaattgattctcacttaaagtttgc-tgcattttacagGGTATTGATCATGTGAATTATCAGATGGAGCACAGAACTGAGTGGTGCCAATGCAATACTACATCCGTTCCATGTTTCCTATTTGCCAGGAAGTTCTCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76015571|gb|DT942741.1|DT942741
EST:     TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAG                         AGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
genomic: TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggccctt ... ttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
EST: gi|149096668|gb|EE182435.2|EE182435
EST:     TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAG                         AGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
genomic: TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggccctt ... ttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
EST: gi|67024768|gb|CO453517.1|CO453517
EST:     TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAG                         AGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
genomic: TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggccctt ... ttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
EST: gi|148964082|gb|EE015236.2|EE015236
EST:     TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAG                         AGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
genomic: TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggccctt ... ttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
EST: gi|149101434|gb|EE187553.2|EE187553
EST:     TATGATACATCTAGCCCTGAGCATATCAATGCTATCAAG                         AGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
genomic: TATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggccctt ... ttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
EST: gi|60347954|gb|DN214927.1|DN214927
EST:     TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAG                         AGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
genomic: TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggccctt ... ttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgctcagttaccaccacaccactcataatttgttatgaatattttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAATGCAATGGTACCTCGGCCCCATGTTTTTTATTTGCCAGGAAGTTCTCCT
                                         tatttttttt  CT-rich tract
                        tcataatttgttatga  TA-rich tract