1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cattctctgccacgtgttgtttggaacttctttcgggtgttttttttcatggtgctgtctggttttcgatctttcattagtctaacgccctggtctgcagGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATTGAGGGGAAGTGACAATGTG
species | Zea mays |
transcript | GRMZM2G151977_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCTTCGAGAGGAAACGTTTTTCGCTACGTCTGTGAGATTGAAAGCGCAGG GTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTTTGCGCTGGGTAGATTEST: gi|67018901|gb|CO447650.1|CO447650
genomic: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGGgtacgcatcc ... tggtctgcagGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATT
EST: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGG GTGCCAAGTATGCCTTAAAGAGTTCCCAAAGGATTCTGCGCTGGGTAGATTEST: gi|37373740|gb|CF623185.1|CF623185
genomic: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGGgtacgcatcc ... tggtctgcagGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATT
EST: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGG GTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATTEST: gi|101393898|gb|EB818882.1|EB818882
genomic: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGGgtacgcatcc ... tggtctgcagGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATT
EST: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGG GTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTTTGCGCTGGGTAGATTEST: gi|37391307|gb|CF632895.1|CF632895
genomic: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGGgtacgcatcc ... tggtctgcagGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATT
EST: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGG GTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATTEST: gi|67013499|gb|CO442248.1|CO442248
genomic: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGGgtacgcatcc ... tggtctgcagGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATT
EST: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGG GTGCCAAGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATTEST: gi|32803400|gb|CD955636.1|CD955636
genomic: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGGgtacgcatcc ... tggtctgcagGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATT
EST: TCTTCGAGAGGAAACGTTCTTCGCTATGTCTGTGAGATTGAAAGCGCAGG GTGCCAAGTAGGCCTTAEST: gi|94478774|gb|EB707732.1|EB707732
genomic: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGGgtacgcatcc ... tggtctgcagGTGCCAGGTAGGCCTTA
EST: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGG GTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATTEST: gi|5761968|gb|AI967016.1|AI967016
genomic: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGGgtacgcatcc ... tggtctgcagGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATT
EST: ACGTCTGTGAGATTGAAAGCGCAGG GTGCCAGGTAGGCCTTAAAAAGCTCCCAAAGGATTTTGCGCTGGGTAGATTEST: gi|37386125|gb|CF630238.1|CF630238
genomic: ACGTCTGTGAGATTGAAAGCGCAGGgtacgcatcc ... tggtctgcagGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATT
EST: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGG GTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATTEST: gi|18181178|gb|BM382388.1|BM382388
genomic: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGGgtacgcatcc ... tggtctgcagGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATT
EST: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGG GTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATTEST: gi|93016571|gb|EB642091.1|EB642091
genomic: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGGgtacgcatcc ... tggtctgcagGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATT
EST: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGG GTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTTTGCGCTGGGTAGATTEST: gi|60349556|gb|DN216529.1|DN216529
genomic: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGGgtacgcatcc ... tggtctgcagGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATT
EST: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGG GTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATTEST: gi|40334075|gb|CK368145.1|CK368145
genomic: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGGgtacgcatcc ... tggtctgcagGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATT
EST: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGG GTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATT
genomic: TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGGgtacgcatcc ... tggtctgcagGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATT
ttcatggtgctgtctggttttcgatctttcattagtctaacgccctggtctgcagGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATTGAGGGGAAGTGACAATGTG
gtctaac putative branch site (score: 67)
tttcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattctctgccacgtgttgtttggaacttctttcgggtgttttttttcatggtgctgtctggttttcgatctttcattagtctaacgccctggtctgcagGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATTGAGGGGAAGTGACAATGTG
- - -tctgcca
- - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - ggtgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatt