1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagttctgttgctcaggtttatatggtcctgtttccccttgtttctgtcacctctgtgatattaatactatggttatttgggggggggggggtggcttattgcagCCGGCTCTACTGTATCTCGTTCCAGGTGTGATCGGATTCGTCGCCGTACACTGTCTCTGGTACGGAGAAGTGAAACAG
species | Zea mays |
transcript | GRMZM2G150251_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGGTATGGCGGTGACCATCATTGTAATGAACTGGTTTCAAGCTGCACAG CCGGCTCTACTGTACCTCGEST: gi|33093608|gb|CF053602.1|CF053602
genomic: TGGGTATGGCGGTGACCATCATTGTAATGAACTGGTTTCAAGCTGCACAGgtgagttctg ... cttattgcagCCGGCTCTACTGTATCTCG
EST: TGGGTATGGCGGTGACCATCATTGTAATGAACTGGTTTCAAGCTGCACAG CCGGCTCCACTGTEST: gi|32837706|gb|CD977384.1|CD977384
genomic: TGGGTATGGCGGTGACCATCATTGTAATGAACTGGTTTCAAGCTGCACAGgtgagttctg ... cttattgcagCCGGCTCTACTGT
EST: TGGGTATGGCGGTGACCATCATTGTAATGAACTGGTTTCAAGCTGCACAG CCGGCTCTACTGTAEST: gi|30031839|gb|CB833690.1|CB833690
genomic: TGGGTATGGCGGTGACCATCATTGTAATGAACTGGTTTCAAGCTGCACAGgtgagttctg ... cttattgcagCCGGCTCTACTGTA
EST: TGGGTATGGCGGTGACCATCATTGTAATGAACTGGTTTCAAGCTGCACAG CCGGCTCTACTGTATCTCGTTCCAGGTGTGATCGGATTCGTCGCCGTACACEST: gi|78123104|gb|DV541488.1|DV541488
genomic: TGGGTATGGCGGTGACCATCATTGTAATGAACTGGTTTCAAGCTGCACAGgtgagttctg ... cttattgcagCCGGCTCTACTGTATCTCGTTCCAGGTGTGATCGGATTCGTCGCCGTACAC
EST: TGGGTATGGCGGTGACCATCATTGTAATGAACTGGTTTCAAGCTGCACAG CCGGCTCTACTGTATCTCGTTCCAGGTGTGATCGGATTCGTCGCCGTACACEST: gi|60337558|gb|DN204531.1|DN204531
genomic: TGGGTATGGCGGTGACCATCATTGTAATGAACTGGTTTCAAGCTGCACAGgtgagttctg ... cttattgcagCCGGCTCTACTGTATCTCGTTCCAGGTGTGATCGGATTCGTCGCCGTACAC
EST: TGGGTATGGCGGTGACCATCATTGTAATGAACTGGTTTCAAGCTGCACAG CCGGCTCTACTGTATCTCGTTCCAGGTGTGATCGGATTCGTCGCCGTACACEST: gi|76282340|gb|DV021908.1|DV021908
genomic: TGGGTATGGCGGTGACCATCATTGTAATGAACTGGTTTCAAGCTGCACAGgtgagttctg ... cttattgcagCCGGCTCTACTGTATCTCGTTCCAGGTGTGATCGGATTCGTCGCCGTACAC
EST: TGGGTATGGCGGTGACCATCATTGTAATGAACTGGTTTCAAGCTGCACAG CCGGCTCTACTGTATCTCGTTCCAGGTGTGATCGGATTCGTCGCCGTACAC
genomic: TGGGTATGGCGGTGACCATCATTGTAATGAACTGGTTTCAAGCTGCACAGgtgagttctg ... cttattgcagCCGGCTCTACTGTATCTCGTTCCAGGTGTGATCGGATTCGTCGCCGTACAC
cctctgtgatattaatactatggttatttgggggggggggggtggcttattgcagCCGGCTCTACTGTATCTCGTTCCAGGTGTGATCGGATTCGTCGCCGTACACTGTCTCTGGTACGGAGAAGTGAAACAG
tattaat putative branch site (score: 205)
atattaatactatggt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttctgttgctcaggtttatatggtcctgtttccccttgtttctgtcacctctgtgatattaatactatggttatttgggggggggggggtggcttattgcagCCGGCTCTACTGTATCTCGTTCCAGGTGTGATCGGATTCGTCGCCGTACACTGTCTCTGGTACGGAGAAGTGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT