Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgttagcctgctgataactttctgtgtgattctactgattatatctacatgtatattcactagaaggcaatcctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGGTCCTTCAGTGCTTCTGTTAAT

Basic information

species Zea mays
transcript GRMZM2G149994_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149994_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os04g42110.1 (Oryza sativa), 3'ss of exon 10
---------gtactgttagcctgctgataactttctg-tgtgattctactgattatatct---acatgtatattc-----actagaag--------gcaatcctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGGTCCTTCAGTGCTTCTGTTAAT
           |   ||||  ||  |||  | |||   ||||| ||| ||  | ||||||   | |||    |||     |||| ||         |||||  ||  | ||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| |                      
gtacctcttacatatttagattgacgatggcattcaaatgtgactctccttgtcatatctcatatatgccctttctttgtactaaaaaagtatcttgcaatttttgatgtagGGAATTATTGTATTGGCTGCTACTAATCGCCCAAATGCAATTGATGCTGCTCTTCTGCGCCCAGGGCGTTTCGATATG----------------------

upper sequence: GRMZM2G149994_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os05g31220.1 (Oryza sativa), 3'ss of exon 6
---------gtactgttagcctgctgataactttctg-tgtgattctactgattatatct---acatgtatattc-----actagaag--------gcaatcctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGGTCCTTCAGTGCTTCTGTTAAT
           |   ||||  ||  |||  | |||   ||||| ||| ||  | ||||||   | |||    |||     |||| ||         |||||  ||  | ||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| |||| ||||||||||| |||| |                      
gtacctcttacatatttagattgacgatggcattcaaatgtgactctccttgtcatatctcatatatgccctttctttgtactaaaaaagtatcttgcaatttttgatgtagGGAATTATTGTATTGGCTGCTACTAATCGCCCAAATGCAATTGATGCTGCTCTTCTGCGCCCAGGGCGTTTTGATATG----------------------

upper sequence: GRMZM2G149994_T02 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA02G13160.1 (Glycine max), 3'ss of exon 11
------------------------------------------------------------------------------------------gtactgttagcctgctgataactttctgt--gtgattctactgattatat-----ctacatgtatattcactagaaggcaatcctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGGTCCTTCAGTGCTTCTGTTAAT
                                                                                                  |||  ||  | |||| | |    | |||  ||   || || |     ||   ||  |||| ||||||     ||  |||||| |||||||| | || ||||  ||||| ||||||||  |||||||||||||||| ||  ||||||| |||||||| |||  |                      
gtaagtatgcctttttcttctttgatgtttgttttaatgacattttatcctctccctgtccttttcctccacccatgaattctttatcaaaaggaaaaagcaagcataaaactgtattcaagagatggtaggcatcatctagtttctttctggctattaactagatctttatt-ttttttcagGGAATTCTTGTTTTGGCAGCTACAAATCGCCCCTATGCAATTGATGCTGCACTCATGCGTCCTGGGCGTTTTGATCTG----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67023930|gb|CO452679.1|CO452679
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|89106043|gb|DY576260.1|DY576260
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|4646479|gb|AI621782.1|AI621782
EST:     ACCGAAATGGATGGTTTAGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: ACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|71331592|gb|DR802638.1|DR802638
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattctactgattatatctacatgtatattcactagaaggcaatcctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCTCTTTTGCGTCCAGGGCGTTTCGATAAGGTCCTTCAGTGCTTCTGTTAAT
     tactgat  putative branch site (score: 2)
                                           tccttttttt  putative PPT
          attatatcta  TA-rich tract