Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcattctcttgaactgtgcgctgtggagcccttgccagtgtgggagaggttcacaccaacatttctttggcactccaaactgatttccttctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCATCGACATGGACGCGGACGTGATCACCATTGAGAACTCGCGGTCCGACG

Basic information

species Zea mays
transcript GRMZM2G149751_T06
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149751_T06 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os12g42876.1 (Oryza sativa), 3'ss of exon 12
gtcattctcttgaactgtgc-gctgtggagcccttgccagtgtgggagaggttcacaccaacatttctttggcactccaaactgatttccttctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCATCGACATGGACGCGGACGTGATCACCATTGAGAACTCGCGGTCCGACG
|| |||  | |  | |   | |  |  |   ||| ||              ||  || |  |  |  | |||  ||   ||   |||||  |   ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| || ||||||||||| |||||||| ||||||||||
gtaatttgccttgattacactgtcgctggagcctcgc-------------attgtcatcgcctatcttctggagctaagaa---atttctct---ttgacagATCCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATCATCAACATGGACGCTGATGTGATCACCATCGAGAACTCCCGGTCCGACG

upper sequence: GRMZM2G149751_T06 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os12g42884.3 (Oryza sativa), 3'ss of exon 13
gtcattctcttgaactgtgcgctgtggagcccttgccagtgtgggagag-gttcacaccaacatttctttggcactccaaactgatttccttctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCATCGACATGGACGCGGACGTGATCACCATTGAGAACTCGCGGTCCGACG
          | | || |   |  |    |   || || ||| ||       |  || || || |  | ||  |||  ||    |   | |||| | | ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||  |||||||||| || ||||||||||| |||||||| ||||||||||
---------gtaatctttcttccatcagac---tgtcactgtaggctttcaatatcatcaccaatcttctgtaacttaaactgaacaactttctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATCATAAACATGGACGCCGATGTGATCACCATCGAGAACTCCCGGTCCGACG

upper sequence: GRMZM2G149751_T06 (Zea mays), 3'ss of exon 10
lower sequence: EFJ05611 (Selaginella moellendorffii), 3'ss of exon 11
gtcattctcttgaactgtgcgctgtggagcccttgccagtgtgggagaggttcacaccaacatttctttggcactccaaactgatttccttctg--ttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCATCGACATGGACGCGGACGTGATCACCATTGAGAACTCGCGGTCCGACG
                                        ||   ||| |     |    |  |   || |      | ||||   |  ||     |   |||||||||||||| |||||||||||| |||||||||||||||||    | ||||||||||||||||| || |||||||| || || ||||| || || || |
----------------------------------------gtaaaagacgcgacgagtttctatagcttcgtgaatgacactggcgttgtttgaaatccacagATCCACACCCATATGTGCTACTCCCACTTCAACGACATCATCACAGCCATCATCGACATGGACGCCGATGTGATCACGATCGAAAACTCTCGCTCGGATG

upper sequence: GRMZM2G149751_T06 (Zea mays), 3'ss of exon 10
lower sequence: EFJ28889 (Selaginella moellendorffii), 3'ss of exon 11
gtcattctcttgaactgtgcgctgtggagcccttgccagtgtgggagaggtt-cacaccaacatttctttggcactccaaactgatttccttctg--ttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCATCGACATGGACGCGGACGTGATCACCATTGAGAACTCGCGGTCCGACG
                                        ||   ||| |   |        ||  ||| |  |||  | ||||   |  ||     |   |||||||||||||| |||||||||||| |||| ||||||||||||    | ||||||||||||||||| || |||||||| || || ||||| || || || |
----------------------------------------gtaaaagacgcgacgagtttctatagcttcgtgactg-acactggcgttgtttgaaatccacagATCCACACCCATATGTGCTACTCCCACTTTAACGACATCATCACAGCCATCATCGACATGGACGCCGATGTGATCACGATCGAAAACTCTCGCTCGGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213188581|gb|FM196386.1|FM196386
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|32850673|gb|CD990354.1|CD990354
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|33101453|gb|CF061413.1|CF061413
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|32830462|gb|CD970140.1|CD970140
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|87153535|gb|DY398324.1|DY398324
EST:     CTGTCCACTCCTTCAGAATCACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|22521000|gb|BU079811.1|BU079811
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|33102405|gb|CF062365.1|CF062365
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|4647628|gb|AI622703.1|AI622703
EST:     TCAGAATTACCAACTGCGAGATCCAGGACNCCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: TCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|6993933|gb|AW453147.1|AW453147
EST:     CTGGCCACTCCTTCAGAATTACCAACTGCGAGAGCCAGGACACCACCCAG                         ATCCACACCCACATGT
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGT
EST: gi|32845865|gb|CD985546.1|CD985546
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|32846752|gb|CD986433.1|CD986433
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|67010620|gb|CO439369.1|CO439369
EST:     CAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|18963577|gb|BM660513.1|BM660513
EST:     CTGTCCACTCCTTCAGAATCACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|22473155|gb|BU037635.1|BU037635
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|60395451|gb|DN228321.1|DN228321
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|33100706|gb|CF060666.1|CF060666
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|60346417|gb|DN213390.1|DN213390
EST:     GGACACCACCCAG                         ATCCACACCCACATGTGCTATTCCAACTTCAACGACATCATCCACTCGATC
genomic: GGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|33100744|gb|CF060704.1|CF060704
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|87155607|gb|DY400396.1|DY400396
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|22819322|gb|BU499412.1|BU499412
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGACATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACT
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACT
EST: gi|32850674|gb|CD990355.1|CD990355
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTTCGAT
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACT-CGAT
EST: gi|32857586|gb|CD997267.1|CD997267
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|32837636|gb|CD977314.1|CD977314
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACAAAATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|32842126|gb|CD981807.1|CD981807
EST:     GAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: GAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|32929695|gb|CF034507.1|CF034507
EST:     TGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCNCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGAT
genomic: TGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACC-CAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGAT
EST: gi|32848812|gb|CD988493.1|CD988493
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|32847463|gb|CD987144.1|CD987144
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|148996046|gb|EE035300.2|EE035300
EST:     CCAACTGCGAGATCCAGGAC-CCACCCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGAT
genomic: CCAACTGCGAGATCCAGGACACCA-CCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGAT
EST: gi|18963575|gb|BM660512.1|BM660512
EST:     CTGTCCACTCCTTCAGAATCACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|78544065|gb|DV621563.1|DV621563
EST:     ATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: ATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|148959015|gb|EE010530.2|EE010530
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|32837591|gb|CD977269.1|CD977269
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTAGNA-
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCG-AT
EST: gi|32830780|gb|CD970458.1|CD970458
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|32837615|gb|CD977293.1|CD977293
EST:     TGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCAATC
genomic: TGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|33102362|gb|CF062322.1|CF062322
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|32929720|gb|CF034532.1|CF034532
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|32845888|gb|CD985569.1|CD985569
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|32850020|gb|CD989701.1|CD989701
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|4753445|gb|AI657355.1|AI657355
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|26558957|gb|CA831192.1|CA831192
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|33101267|gb|CF061227.1|CF061227
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|32839141|gb|CD978822.1|CD978822
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATG
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATG
EST: gi|213188636|gb|FM184694.1|FM184694
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
EST: gi|149087939|gb|EE177184.2|EE177184
EST:     CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAG                         ATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC
genomic: CTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctct ... ctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaggttcacaccaacatttctttggcactccaaactgatttccttctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCATCGACATGGACGCGGACGTGATCACCATTGAGAACTCGCGGTCCGACG
                                aactgat  putative branch site (score: 3)
                                      tttccttctgtt  CT-rich tract
               atttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcattctcttgaactgtgcgctgtggagcccttgccagtgtgggagaggttcacaccaacatttctttggcactccaaactgatttccttctgttggcagATCCACACCCACATGTGCTACTCCAACTTCAACGACATCATCCACTCGATCATCGACATGGACGCGGACGTGATCACCATTGAGAACTCGCGGTCCGACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA