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gtaagctctatcaggcatcctcgatcggatggctggagccaggcagatgctagccatctgccattcatcaggatacatatatatattatgttctctgtcaaattccgaatctttacagctgcgttgtatatatctccactgcccagGTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACACTCACGCGGATCTGAAATCCTACGACGACAGCAAGGCCTGATCAGAGGAC
species | Zea mays |
transcript | GRMZM2G147882_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACACEST: gi|211415426|gb|FL477512.1|FL477512
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACAC
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACACEST: gi|32924444|gb|CF029256.1|CF029256
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACAC
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTAEST: gi|211525267|gb|FL432922.1|FL432922
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGTA
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACACEST: gi|32923806|gb|CF028618.1|CF028618
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACAC
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTEST: gi|71299018|gb|DR785501.1|DR785501
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGT
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGTTCCGCGTACCTGTCCCAGCGCTACAAGGACACEST: gi|32923874|gb|CF028686.1|CF028686
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACAC
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTACCTGEST: gi|32924334|gb|CF029146.1|CF029146
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGTACCTG
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTEST: gi|78021585|gb|DV489972.1|DV489972
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGT
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACACEST: gi|32923638|gb|CF028450.1|CF028450
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACAC
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTEST: gi|76287314|gb|DV026882.1|DV026882
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGT
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACACEST: gi|71429425|gb|DR810475.1|DR810475
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACAC
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACACEST: gi|32858735|gb|CD998416.1|CD998416
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACAC
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACACEST: gi|32923912|gb|CF028724.1|CF028724
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACAC
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTEST: gi|32923869|gb|CF028681.1|CF028681
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGT
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTEST: gi|32923708|gb|CF028520.1|CF028520
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGT
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTEST: gi|32924079|gb|CF028891.1|CF028891
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGT
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTACCTGEST: gi|74241069|gb|DT648983.1|DT648983
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGTACCTG
EST: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAA GTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACAC
genomic: TGCGTGGTGGAGTGCCTGCCGACCTGCAAGTCCGAATCAAATCCTCCAAAgtaagctcta ... cactgcccagGTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACAC
tctctgtcaaattccgaatctttacagctgcgttgtatatatctccactgcccagGTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACACTCACGCGGATCTGAAATCCTACGACGACAGCAAGGCCTGATCAGAGGAC
tctccact CT-rich tract
ttgtatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctctatcaggcatcctcgatcggatggctggagccaggcagatgctagccatctgccattcatcaggatacatatatatattatgttctctgtcaaattccgaatctttacagctgcgttgtatatatctccactgcccagGTTCCCTCCGATCACCTGCTCCGCGTACCTGTCCCAGCGCTACAAGGACACTCACGCGGATCTGAAATCCTACGACGACAGCAAGGCCTGATCAGAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA