1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...taagttaactctgtttagtgttagtgtgaccactgacaaatcattccttgctctagctcccctgtaagcaggaaattaacatctctttctgactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGGCTATGAAATTTGCTTATCCTCATGTAACAGTGCTTTGTTTATAACTTA
species | Zea mays |
transcript | GRMZM2G147671_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGEST: gi|211525286|gb|FK977009.1|FK977009
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGEST: gi|32915272|gb|CF020084.1|CF020084
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGEST: gi|15053742|gb|BI359287.1|BI359287
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGEST: gi|12968898|gb|BG265739.1|BG265739
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGEST: gi|15053743|gb|BI359288.1|BI359288
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGEST: gi|32937218|gb|CF042037.1|CF042037
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGEST: gi|28984428|gb|BQ539033.2|BQ539033
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAA GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCEST: gi|9733091|gb|BE511843.1|BE511843
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTC
EST: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGEST: gi|5770174|gb|AI973348.1|AI973348
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGEST: gi|37382952|gb|CF628448.1|CF628448
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGEST: gi|15053278|gb|BI358823.1|BI358823
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGEST: gi|60354976|gb|DN221949.1|DN221949
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGEST: gi|4609687|gb|AI600526.1|AI600526
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
ccttgctctagctcccctgtaagcaggaaattaacatctctttctgactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGGCTATGAAATTTGCTTATCCTCATGTAACAGTGCTTTGTTTATAACTTA
ttctgac putative branch site (score: 2)
tctctttctgacttt CT-rich tract
aaattaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagttaactctgtttagtgttagtgtgaccactgacaaatcattccttgctctagctcccctgtaagcaggaaattaacatctctttctgactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGGCTATGAAATTTGCTTATCCTCATGTAACAGTGCTTTGTTTATAACTTA
- - - - -tctgttt
- - - - - - - - - - - - - - -ccactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcagga