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gtatgaatgctagatccttacatgccacagtgctagttttctctgtttttcttcccttttgaattcacatggttctctgcatgtatcaagtcacactttctctttatttatgtcggtaacttctgtatagttggagtcacatgatcaccttttgtttccactttggcagGATGTTTTTGACTTGCCCTTTCATATGGCCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAG
species | Zea mays |
transcript | GRMZM2G147500_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGGAAGACAGGAGTCAGGGTCTCCTCAGTCTCCGCTTGGTGGCAAGACG GATGTTTTTGACTTGCCCTTTCATATGGCCAGAGATCAGATAGAAGAGAGTEST: gi|31405728|gb|CD484460.1|CD484460
genomic: ATGGAAGACAGGAGTCAGGGTCTCCTCAGTCTCCGCTTGGTGGCAAGACGgtatgaatgc ... actttggcagGATGTTTTTGACTTGCCCTTTCATATGGCCAGAGATCAGATAGAAGAGAGT
EST: ATGGAAGACAGGAGTCAGGGTCTCCTCAGTCTCCGCTTGGTGGCAAGACG GATGTTTTTGACTTGCCCTTTCATATGGCCAGAGATCAGATAGAAGAGAGTEST: gi|60342233|gb|DN209206.1|DN209206
genomic: ATGGAAGACAGGAGTCAGGGTCTCCTCAGTCTCCGCTTGGTGGCAAGACGgtatgaatgc ... actttggcagGATGTTTTTGACTTGCCCTTTCATATGGCCAGAGATCAGATAGAAGAGAGT
EST: ATGGAAGACAGGAGTCAGGGTCTCCTCAGTCTCCGCTTGGTGGCAAGACG GATGTTTTTGACTTGCCCTTTCATATGGCCAGAGATCAGATAGAAGAGAGTEST: gi|32943705|gb|CF048524.1|CF048524
genomic: ATGGAAGACAGGAGTCAGGGTCTCCTCAGTCTCCGCTTGGTGGCAAGACGgtatgaatgc ... actttggcagGATGTTTTTGACTTGCCCTTTCATATGGCCAGAGATCAGATAGAAGAGAGT
EST: ATGGAAGACAGGAGTCAGGGTCTCCTCAGTCTCCGCTTGGTGGCAAGACG GATGTTTTTGACTTGCCCTTTCATATGGCCAGAGATCAGATAGAAGAGAGTEST: gi|60350197|gb|DN217170.1|DN217170
genomic: ATGGAAGACAGGAGTCAGGGTCTCCTCAGTCTCCGCTTGGTGGCAAGACGgtatgaatgc ... actttggcagGATGTTTTTGACTTGCCCTTTCATATGGCCAGAGATCAGATAGAAGAGAGT
EST: ATGGAAGACAGGAGTCAGGGTCTCCTCAGTCTCCGCTTGGTGGCAAGACG GATGTTTTTGACTTGCCCTTTCATATGGCCAGAGATCAGATAGAAGAGAGTEST: gi|148955451|gb|EC901042.2|EC901042
genomic: ATGGAAGACAGGAGTCAGGGTCTCCTCAGTCTCCGCTTGGTGGCAAGACGgtatgaatgc ... actttggcagGATGTTTTTGACTTGCCCTTTCATATGGCCAGAGATCAGATAGAAGAGAGT
EST: ATGGAAGACAGGAGTCAGGGTCTCCTCAGTTTCCGCTTGGTGGCAAGACG GATGTTTTTGACTTGCCCTTTCATATGGCCAGAGATCAGATAGAAGAGAGT
genomic: ATGGAAGACAGGAGTCAGGGTCTCCTCAGTCTCCGCTTGGTGGCAAGACGgtatgaatgc ... actttggcagGATGTTTTTGACTTGCCCTTTCATATGGCCAGAGATCAGATAGAAGAGAGT
ggtaacttctgtatagttggagtcacatgatcaccttttgtttccactttggcagGATGTTTTTGACTTGCCCTTTCATATGGCCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAG
cggtaac putative branch site (score: 3)
ccttttgtttccactt putative PPT
ttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaatgctagatccttacatgccacagtgctagttttctctgtttttcttcccttttgaattcacatggttctctgcatgtatcaagtcacactttctctttatttatgtcggtaacttctgtatagttggagtcacatgatcaccttttgtttccactttggcagGATGTTTTTGACTTGCCCTTTCATATGGCCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA