1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagcttctgtgcacttatttacgtactgtttactgtatttcagccccacgctggagagatttaacacctgctttcgttcctattcagGTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCGACAGGGATCTCAGAGATTCATTTGATATTCTTGAGCTGGAGTGTTCAGTTGACGTGA
species | Zea mays |
transcript | GRMZM2G146794_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCTTGAGCAATGGACATGGCCAGTCTCAGAAAGGCATGATTCTAGACTGG GTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCGACAGGGATEST: gi|91875937|gb|EB405894.1|EB405894
genomic: CCTTGAGCAATGGACATGGCCAGTCTCAGAAAGGCATGATTCTAGACTGGgtaagcttct ... tcctattcagGTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCGACAGGGAT
EST: CCTTGAGCAATGGACATGGCCAGTCTCAGAAAGGCATGATTCTAGACTGG GTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCG
genomic: CCTTGAGCAATGGACATGGCCAGTCTCAGAAAGGCATGATTCTAGACTGGgtaagcttct ... tcctattcagGTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCG
ctgtatttcagccccacgctggagagatttaacacctgctttcgttcctattcagGTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCGACAGGGATCTCAGAGATTCATTTGATATTCTTGAGCTGGAGTGTTCAGTTGACGTGA
atttaac putative branch site (score: 10)
cctgctttcgttcct CT-rich tract
agatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttctgtgcacttatttacgtactgtttactgtatttcagccccacgctggagagatttaacacctgctttcgttcctattcagGTTAGAGAGCTAAAGGAGGACAAGAGACCGGATAAGCTGGTCGACAGGGATCTCAGAGATTCATTTGATATTCTTGAGCTGGAGTGTTCAGTTGACGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA