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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccaagtgaccaaaggtggctattgtgagttttcatgcacgtagagttcccttctgttttttatagagtaacaatcttgtaaatttatgtttgtattgcagGTCGACAGAAGCCTCTCATTTCTAAACAGTTATGTGCAGCAAGCCTTGGAAAATGGTGCGTCCCCTTACATTCCAGAGAGTGAACGCTCTGGTGTTATAA

Basic information

species Zea mays
transcript GRMZM2G146697_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146697_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g68750.1 (Oryza sativa), 3'ss of exon 10
---ccaagtgaccaaaggtggctattgtgagttttcatgcacgtagagttcccttctgttttttatagagtaacaatcttgtaaat-ttatgtttgtattgcagGTCGACAGAAGCCTCTCATTTCTAAACAGTTATGTGCAGCAAGCCTTGGAAAATGGTGCGTCCCCTTACATTCCAGAGAGTGAACGCTCTGGTGTTATAA
   | |  | | || |      ||  |  |   ||     |  | ||   |     |     | | || | |||  | |     ||  ||  ||| | |||||| ||||||||| |||||| ||||||||  ||||||||||||||||| | |||||||||||  | || |||||||| |||||||||||||| || ||  |||
tttctacataagcacacaactttaaagcaaaagtt---ataaattgaac-caagcgtaagagtaaaagggcaaccttttcacggatactaaatttatgttgcagATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAAAATGGTGCTGCACCCTACATTCCTGAGAGTGAACGCTCAGGAGTGGTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcccttctgttttttatagagtaacaatcttgtaaatttatgtttgtattgcagGTCGACAGAAGCCTCTCATTTCTAAACAGTTATGTGCAGCAAGCCTTGGAAAATGGTGCGTCCCCTTACATTCCAGAGAGTGAACGCTCTGGTGTTATAA
                   gagtaac  putative branch site (score: 2)
                              ttgtaaatttatgttt  TA-rich tract