1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagtgataggttccccgacttttttttttcccatggcccgcccatatacacgttgctaaccgactgggtgtgtgtggttcttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG
species | Zea mays |
transcript | GRMZM2G146463_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGGACA-CATCGACCTEST: gi|22935898|gb|BU572173.1|BU572173
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGG-ACAACATCGACCT
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|78113279|gb|DV531671.1|DV531671
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCNAGCCEST: gi|91054335|gb|EB164753.1|EB164753
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACEST: gi|86465787|gb|DY232160.1|DY232160
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAAC
EST: CGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|78113278|gb|DV531670.1|DV531670
genomic: CGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: CAACGACCCATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|86466262|gb|DY232634.1|DY232634
genomic: CAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: ACGGC-ACAGCCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|22472587|gb|BU037067.1|BU037067
genomic: ACGGCAACAG-CTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|26560002|gb|CA832237.1|CA832237
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|71443417|gb|DR824467.1|DR824467
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|50334851|gb|CO529977.1|CO529977
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: ACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|60357458|gb|DN224431.1|DN224431
genomic: ACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|71431665|gb|DR812715.1|DR812715
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCCTGA-CGACGCCTACGCCCGGGACGCCAAGCEST: gi|78108215|gb|DV526633.1|DV526633
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACC-TGAACGACGCCTACGCCCGGTACGCCAAGC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|149055656|gb|EE156361.2|EE156361
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|78075209|gb|DV503643.1|DV503643
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|71442889|gb|DR823939.1|DR823939
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGGACGCCTAGCCEST: gi|78088431|gb|DV516824.1|DV516824
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: ACNGGCA-CAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACCCCCAAGCEST: gi|26559550|gb|CA831785.1|CA831785
genomic: AC-GGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCC-AAGC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|71443418|gb|DR824468.1|DR824468
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTAEST: gi|71443280|gb|DR824330.1|DR824330
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTA
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCNAGCCEST: gi|87156914|gb|DY401703.1|DY401703
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|71318127|gb|DR795825.1|DR795825
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACTACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|87157241|gb|DY402030.1|DY402030
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|148940241|gb|EC885013.2|EC885013
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACEST: gi|23199550|gb|BU582115.1|BU582115
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAAC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|91875282|gb|EB405239.1|EB405239
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCCAGCCEST: gi|149009677|gb|EE041609.2|EE041609
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|78110547|gb|DV528957.1|DV528957
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|148973153|gb|EE024223.2|EE024223
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCCGTACGCCCAGCCEST: gi|78088430|gb|DV516823.1|DV516823
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|149013904|gb|EE043402.2|EE043402
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCEST: gi|89763957|gb|DY690934.1|DY690934
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCC
EST: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGG CATGCTGGACAACATCGACCTGAACG
genomic: TACGGCAACAGCTGGAGGACCACCGGCGACATCAACGACACATGGTCAGGgtaagtgata ... cttgcgatagCATGCTGGACAACATCGACCTGAACG
ggcccgcccatatacacgttgctaaccgactgggtgtgtgtggttcttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG
tgctaac putative branch site (score: 1)
ttcttgc putative PPT
atataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgataggttccccgacttttttttttcccatggcccgcccatatacacgttgctaaccgactgggtgtgtgtggttcttgcgatagCATGCTGGACAACATCGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA