1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagttcctttgtggttccccttcacgacaataacaccatctttaacgcgatattgagatcatcagttcatagccttcatgaatcagatgatctaaataggcaaatatggtctgaagtacacttgacatttaggggaactgaactatcgttgttgcagGGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCACATGGAGTTCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGC
species | Zea mays |
transcript | GRMZM2G144730_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGA GGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCAEST: gi|71764040|gb|DR961977.1|DR961977
genomic: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGAgtgagttcct ... gttgttgcagGGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGA GGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCAEST: gi|7227784|gb|AW566425.1|AW566425
genomic: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGAgtgagttcct ... gttgttgcagGGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCAEST: gi|7238117|gb|AW573339.1|AW573339
genomic: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGAgtgagttcct ... gttgttgcagGGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGA GGAACGAGTGAAGCAACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCAEST: gi|32860149|gb|CD999830.1|CD999830
genomic: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGAgtgagttcct ... gttgttgcagGGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGA GGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCAEST: gi|32860148|gb|CD999829.1|CD999829
genomic: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGAgtgagttcct ... gttgttgcagGGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGA GGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCAEST: gi|60400196|gb|DN233003.1|DN233003
genomic: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGAgtgagttcct ... gttgttgcagGGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGA GGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCAEST: gi|148966756|gb|EE017836.2|EE017836
genomic: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGAgtgagttcct ... gttgttgcagGGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTTTACAATATTTGCGTTTACAAACGA GGAACGAGTGAAGCTACGGCTAGCACTTTACCAGGGGGTCATCCCTATTCAEST: gi|148958743|gb|EC905020.2|EC905020
genomic: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGAgtgagttcct ... gttgttgcagGGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGA GGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCAEST: gi|32934959|gb|CF039771.1|CF039771
genomic: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGAgtgagttcct ... gttgttgcagGGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGA GGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCAEST: gi|32931620|gb|CF036432.1|CF036432
genomic: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGAgtgagttcct ... gttgttgcagGGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGA GGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCAEST: gi|60344484|gb|DN211457.1|DN211457
genomic: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGAgtgagttcct ... gttgttgcagGGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCA
EST: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGA GGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCA
genomic: CTCCTGAGCCACTATCGTCCCTCGTCTACAATATTTGCGTTTACAAACGAgtgagttcct ... gttgttgcagGGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCA
aatatggtctgaagtacacttgacatttaggggaactgaactatcgttgttgcagGGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCACATGGAGTTCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGC
acttgac putative branch site (score: 274)
acattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcctttgtggttccccttcacgacaataacaccatctttaacgcgatattgagatcatcagttcatagccttcatgaatcagatgatctaaataggcaaatatggtctgaagtacacttgacatttaggggaactgaactatcgttgttgcagGGAACGAGTGAAGCTACGGCTAGCACTCTACCAGGGGGTCATCCCTATTCACATGGAGTTCTCTGACGACGCAGAAGAAACTTTCTCCAGAGCAATTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA