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gtttgtaaaaggttgattttcatgtgctttcacacagaagattttgactcttggacaattgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGACAG
species | Zea mays |
transcript | GRMZM2G144254_T06 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGEST: gi|93281607|gb|EB673871.1|EB673871
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGEST: gi|32844477|gb|CD984158.1|CD984158
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGEST: gi|5296213|gb|AI782893.1|AI782893
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGEST: gi|32808432|gb|CD960666.1|CD960666
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: GATCTCCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGEST: gi|6828189|gb|AW331832.1|AW331832
genomic: GATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCNCTGCCGAGGAATCTATAATTGATATGGEST: gi|6227147|gb|AW155676.1|AW155676
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGEST: gi|32792658|gb|CD944894.1|CD944894
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: GATCTGCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGEST: gi|60351321|gb|DN218294.1|DN218294
genomic: GATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: CTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGEST: gi|113701592|gb|EE679096.1|EE679096
genomic: CTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGEST: gi|211277446|gb|FL309933.1|FL309933
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGEST: gi|60350817|gb|DN217790.1|DN217790
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGEST: gi|60356320|gb|DN223293.1|DN223293
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGEST: gi|19822362|gb|BQ048386.1|BQ048386
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGEST: gi|32844487|gb|CD984168.1|CD984168
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGEST: gi|19822356|gb|BQ048380.1|BQ048380
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGEST: gi|78022546|gb|DV490933.1|DV490933
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
EST: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAG CTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
genomic: GACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaa ... ttgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGG
tgattttcatgtgctttcacacagaagattttgactcttggacaattgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGACAG
ttttgac putative branch site (score: 6)
aagatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtaaaaggttgattttcatgtgctttcacacagaagattttgactcttggacaattgtcaccagCTGATACGAAAGATGGTTCGAGCACTGCCGAGGAATCTATAATTGATATGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG