1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttagttgtcaaggacacataagtacattactgaattacataaaatgccttaaattcttctgtctctgtgacatttgacgtggtatatactttaatacagATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTGAATTTTCAGCTATTTGAGACAGCAACTCTCTTCATAACAGTACTTGTGG
species | Zea mays |
transcript | GRMZM2G143356_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TAACACTTGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTGEST: gi|60357296|gb|DN224269.1|DN224269
genomic: TAACACTTGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tttaatacagATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTG
EST: TAACACTTGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTGEST: gi|148952029|gb|EC897815.2|EC897815
genomic: TAACACTTGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tttaatacagATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTG
EST: TAACACTTGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTGEST: gi|12968375|gb|BG265321.1|BG265321
genomic: TAACACTTGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tttaatacagATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTG
EST: TAACACTTGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTGEST: gi|91870161|gb|EB400733.1|EB400733
genomic: TAACACTTGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tttaatacagATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTG
EST: TAACACTTGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTGEST: gi|60351533|gb|DN218506.1|DN218506
genomic: TAACACTTGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tttaatacagATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTG
EST: TAACACTTGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTGEST: gi|110949660|gb|EE169817.1|EE169817
genomic: TAACACTTGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tttaatacagATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTG
EST: TAACACTTGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTGEST: gi|148951917|gb|EC897693.2|EC897693
genomic: TAACACTTGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tttaatacagATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTG
EST: TAACACTTGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTG
genomic: TAACACTTGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tttaatacagATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTG
tgccttaaattcttctgtctctgtgacatttgacgtggtatatactttaatacagATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTGAATTTTCAGCTATTTGAGACAGCAACTCTCTTCATAACAGTACTTGTGG
ctttaat putative branch site (score: 417)
tatatactttaataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagttgtcaaggacacataagtacattactgaattacataaaatgccttaaattcttctgtctctgtgacatttgacgtggtatatactttaatacagATTCCATTTTGTGTTGTTATTGGTTGGACGATGGGACAAAAGATGGACTTGAATTTTCAGCTATTTGAGACAGCAACTCTCTTCATAACAGTACTTGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - ggacaca
- - - - - - - - - - - - - - -actgaat
- - - - - - - - - - - - - - - - - - -acataaa
- - - - - - - - - - - - - - - - - - - - - - -tgcctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatttg