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gtactgtattactgtttcaagaaacgcgtactattcaattcaatctgatgtcatagcaggctaaaccttacagtggttttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTCAACAACATAGCAGTCTCAAGACCATCAAGAAGAAGCTGATCCGCAAAG
species | Zea mays |
transcript | GRMZM2G141931_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAATGTGTCACGAGAAATGCTTEST: gi|31354312|gb|CD438669.1|CD438669
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|32847287|gb|CD986968.1|CD986968
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: ACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|67017884|gb|CO446633.1|CO446633
genomic: ACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|60344141|gb|DN211114.1|DN211114
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|31356123|gb|CD440480.1|CD440480
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|21987199|gb|BQ778727.1|BQ778727
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACCCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|26456287|gb|CA827870.1|CA827870
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|7227450|gb|AW566091.1|AW566091
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|21987561|gb|BQ779089.1|BQ779089
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACCCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|67040100|gb|CO466355.1|CO466355
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
ttcaattcaatctgatgtcatagcaggctaaaccttacagtggttttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTCAACAACATAGCAGTCTCAAGACCATCAAGAAGAAGCTGATCCGCAAAG
accttac putative branch site (score: 3)
ttttatct putative PPT
ttttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtattactgtttcaagaaacgcgtactattcaattcaatctgatgtcatagcaggctaaaccttacagtggttttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTCAACAACATAGCAGTCTCAAGACCATCAAGAAGAAGCTGATCCGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG