1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...ccaagtttacaaaatagcttgccatgcagtttccagcttatcatactttagttaattgcctgtaatttatacatctgagatgtaaaatgttgatctgtagGGAGATCACGTGGCACTGCTGTCAGCATTTTCAGAGATGGGGCTTAAACTGCGGGTTGACATGCCTCAGCAGGCTATGGATATTGCCACAGTATTCTTTC
species | Zea mays |
transcript | GRMZM2G140917_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTGAATCTATGAGGCAGGCACTAGCAAAAATGTTTTTGTCATGTGCAGAG GGAGATCACGTGGCACTGCTGTCAGCATTTTCAGAGATGGGGCTTAAACTGEST: gi|148966697|gb|EE017760.2|EE017760
genomic: CTGAATCTATGAGGCAGGCACTAGCAAAAATGTTTTTGTCATGTGCAGAGgtttgtgaac ... tgatctgtagGGAGATCACGTGGCACTGCTGTCAGCATTTTCAGAGATGGGGCTTAAACTG
EST: CTGAATCTATGAGGCAGGCACTAGCAAAAATGTTTTTGTCATGTGCAGAG GGAGATCACGTGGCACTGCTGTCAGCATTTTCAGAGATGGGGCTTAAACTGEST: gi|211144284|gb|FL032426.1|FL032426
genomic: CTGAATCTATGAGGCAGGCACTAGCAAAAATGTTTTTGTCATGTGCAGAGgtttgtgaac ... tgatctgtagGGAGATCACGTGGCACTGCTGTCAGCATTTTCAGAGATGGGGCTTAAACTG
EST: CTGAATCTATGAGGCAGGCACTAGCAAAAATGTTTTTGTCATGTGCAGAG GGAGATCACGTGGCACTGCTGTCAGCATTTTCAGAGATGGGGCTTAAACTGEST: gi|211144280|gb|FL032422.1|FL032422
genomic: CTGAATCTATGAGGCAGGCACTAGCAAAAATGTTTTTGTCATGTGCAGAGgtttgtgaac ... tgatctgtagGGAGATCACGTGGCACTGCTGTCAGCATTTTCAGAGATGGGGCTTAAACTG
EST: CTGAATCTATGAGGCAGGCACTAGCAAAAATGTTTTTGTCATGTGCAGAG GGAGATCACGTGGCACTGCTGTCAGCATTTTCAGAGATGGGGCTTAAACTGEST: gi|211142860|gb|FL032421.1|FL032421
genomic: CTGAATCTATGAGGCAGGCACTAGCAAAAATGTTTTTGTCATGTGCAGAGgtttgtgaac ... tgatctgtagGGAGATCACGTGGCACTGCTGTCAGCATTTTCAGAGATGGGGCTTAAACTG
EST: CTGAATCTATGAGGCAGGCACTAGCAAAAATGTTTTTGTCATGTGCAGAG GGAGATCACGTGGCACTGCTGTCAGCATTTTCAGAGATGGGGCTTAAACTG
genomic: CTGAATCTATGAGGCAGGCACTAGCAAAAATGTTTTTGTCATGTGCAGAGgtttgtgaac ... tgatctgtagGGAGATCACGTGGCACTGCTGTCAGCATTTTCAGAGATGGGGCTTAAACTG
ctttagttaattgcctgtaatttatacatctgagatgtaaaatgttgatctgtagGGAGATCACGTGGCACTGCTGTCAGCATTTTCAGAGATGGGGCTTAAACTGCGGGTTGACATGCCTCAGCAGGCTATGGATATTGCCACAGTATTCTTTC
tgttgat putative branch site (score: 292)
tgtaatttatacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaagtttacaaaatagcttgccatgcagtttccagcttatcatactttagttaattgcctgtaatttatacatctgagatgtaaaatgttgatctgtagGGAGATCACGTGGCACTGCTGTCAGCATTTTCAGAGATGGGGCTTAAACTGCGGGTTGACATGCCTCAGCAGGCTATGGATATTGCCACAGTATTCTTTC
- - - -tacaaaa
- - - - - - - - - - -ccatgca
- - - - - - - - - - - - - - - -tccagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcctgta