1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtattctactaccactaccatccttgtatcgtttctcacaattctgactgacaatgtttgtggtatagcagTCCTATTCCTGGAAGAGCAAACATGTCTACGCCAGTTTCACCATGCTCAAGCCCGCTGCGGCAGTTTAAGCAATCCAATGTGAGGGGCATGCGTTCTCCA
species | Zea mays |
transcript | GRMZM2G140726_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGCATGAGAGATTTTACTGGATTTTCCACTACTGTTCCTTCACCACACAG TCCTATTCCTGGAAGAGCAAACATGTCTACGCCAGTTTCACCATGCTCAAGEST: gi|76920827|gb|DV168328.1|DV168328
genomic: GGCATGAGAGATTTTACTGGATTTTCCACTACTGTTCCTTCACCACACAGgtattctact ... ggtatagcagTCCTATTCCTGGAAGAGCAAACATGTCTACGCCAGTTTCACCATGCTCAAG
EST: ATTTTCCACTACTGTTCCTTCACCACACAG TCCTATTCCTGGAAGAGCAAACATGTCTACGCCAGTTTCACCATGCTCAAGEST: gi|33092164|gb|CF052158.1|CF052158
genomic: ATTTTCCACTACTGTTCCTTCACCACACAGgtattctact ... ggtatagcagTCCTATTCCTGGAAGAGCAAACATGTCTACGCCAGTTTCACCATGCTCAAG
EST: GGCATGAGAGATTTTACTGGATTTTCCACTACTGTTCCTTCACCACACAG CAGCCCTATTCCTGGAAGAGCAAACATGTCTACGCCAGTTTCACCATGCTCEST: gi|13316055|gb|BG410502.1|BG410502
genomic: GGCATGAGAGATTTTACTGGATTTTCCACTACTGTTCCTTCACCACACAGgtattctact ... ggtatagcagT--CC-TATTCCTGGAAGAGCAAACATGTCTACGCCAGTTTCACCATGCTC
EST: GGCATGAGAGATTTTACTGGATTTTCCACTACTGTTCCTTCACCACACAG TCCTATTCCTGGAAGAGCAAACATGTCTACGCCAGTTTCACCATGCTCAAGEST: gi|78025110|gb|DV493497.1|DV493497
genomic: GGCATGAGAGATTTTACTGGATTTTCCACTACTGTTCCTTCACCACACAGgtattctact ... ggtatagcagTCCTATTCCTGGAAGAGCAAACATGTCTACGCCAGTTTCACCATGCTCAAG
EST: GGCATGAGAGATTTTACTGGATTTTCCACTACTGTTCCTTCACCACACAG TCCTATTCCTGGAAGAGCAAACATGTCTACGCCAGTTTCACCATGCTCAAGEST: gi|74235692|gb|DT643606.1|DT643606
genomic: GGCATGAGAGATTTTACTGGATTTTCCACTACTGTTCCTTCACCACACAGgtattctact ... ggtatagcagTCCTATTCCTGGAAGAGCAAACATGTCTACGCCAGTTTCACCATGCTCAAG
EST: GGCATGAGAGATTTTACTGGATTTTCCACTACTGTTCCTTCACCACACAG TCCTATTCCTGGAAGAGCAAACATGTTTACGCCAGTTTCACCATGCTCAAG
genomic: GGCATGAGAGATTTTACTGGATTTTCCACTACTGTTCCTTCACCACACAGgtattctact ... ggtatagcagTCCTATTCCTGGAAGAGCAAACATGTCTACGCCAGTTTCACCATGCTCAAG
accatccttgtatcgtttctcacaattctgactgacaatgtttgtggtatagcagTCCTATTCCTGGAAGAGCAAACATGTCTACGCCAGTTTCACCATGCTCAAGCCCGCTGCGGCAGTTTAAGCAATCCAATGTGAGGGGCATGCGTTCTCCA
gactgac putative branch site (score: 21)
aatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattctactaccactaccatccttgtatcgtttctcacaattctgactgacaatgtttgtggtatagcagTCCTATTCCTGGAAGAGCAAACATGTCTACGCCAGTTTCACCATGCTCAAGCCCGCTGCGGCAGTTTAAGCAATCCAATGTGAGGGGCATGCGTTCTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA