Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggcatgcaatcaatgtccacgtcacatacgcgcaggcacagaactgaatgagcatatatttctcgtgattactgtcatctcaaggttctattatatccagGTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTTCTACAATACTCACCAAATCTACGGTGCACTGCT

Basic information

species Zea mays
transcript GRMZM2G138676_T03
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G138676_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os03g62500.1 (Oryza sativa), 3'ss of exon 10
ggcatgcaatcaatgtccacgtcacatacgcg--caggcacagaactgaatgagcatatatttctcgtgattactgtcatctcaaggttctattat--atccagGTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTTCTACAATACTCACCAAATCTACGGTGCACTGCT
    ||  | |||||||||  | |  |  | |  ||     | || | ||  |  |  |  |    ||  ||  ||| |    || ||| | || |  | ||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||
---gtgtgagcaatgtccatattatgtgtgtgttcaattggaaaattaaacaa-tactttctcactgttctttttgtaactcaaaagttttgttttttacccagGTTTTCCAAAAAAGGCTTCCACCTGAAGCAGTGGACCTTGTAAGCAGGTTTCTGCAATACTCACCAAATCTTCGGTGCACCGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76292959|gb|DV032527.1|DV032527
EST:     ACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAG                         GTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTT
genomic: ACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAGgtaattaata ... ttatatccagGTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTT
EST: gi|31355062|gb|CD439419.1|CD439419
EST:     ACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAG                         GTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTT
genomic: ACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAGgtaattaata ... ttatatccagGTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTT
EST: gi|38229772|gb|CF920085.1|CF920085
EST:     ACTACACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAG                         GTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTT
genomic: ACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAGgtaattaata ... ttatatccagGTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTT
EST: gi|71322556|gb|DR797955.1|DR797955
EST:     ACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAG                         GTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTCGTTAGCAGGTTT
genomic: ACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAGgtaattaata ... ttatatccagGTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTT
EST: gi|71312506|gb|DR792786.1|DR792786
EST:     ACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAG                         GTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTT
genomic: ACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAGgtaattaata ... ttatatccagGTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTT
EST: gi|32834795|gb|CD974473.1|CD974473
EST:     ACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAG                         GTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTT
genomic: ACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAGgtaattaata ... ttatatccagGTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTT
EST: gi|32928721|gb|CF033533.1|CF033533
EST:     ACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAG                         GTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTT
genomic: ACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAGgtaattaata ... ttatatccagGTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTT
EST: gi|76292960|gb|DV032528.1|DV032528
EST:     ACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAG                         GTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTT
genomic: ACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAGgtaattaata ... ttatatccagGTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatgagcatatatttctcgtgattactgtcatctcaaggttctattatatccagGTTTTTCAAAGAAGGCTTCCACCTGAAGCAGTGGACCTTGTTAGCAGGTTTCTACAATACTCACCAAATCTACGGTGCACTGCT
                                        ttctatt  CT-rich tract
                                        ttctattatat  TA-rich tract