Sequence
atgc intronic sequence ATGC exonic sequencegtattacgttttacctggttcaattctttcagtaatgtgagatgtttacataactggtgatttattataaattcctgacttaacatgttttcatttgcttagGATGTTGTATGTATGAGATGGCAGCTCACCGCCCTGCCTTCAAGGCATTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G137118_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os05g36960.1 (Oryza sativa), 3'ss of exon 9
gtattacgttttacctggttcaattctttcagtaatgtgagatgtttacataactggtgatttattataaattcctgacttaacatgttttcatttgcttagGATGTTGTATGTATGAGATGGCAGCTCACCGCCCTGCCTTCAAGGCATTT
|| ||| | | |||| | | | ||| | || |||| |||||| ||| || | ||| | |||| | |||| || ||||||||||||||||||||||| || |||||||||||||| |||
----------gtaactgcctttttctcctcaggtcttctacaagttcatattactgcatatttatcttaattt---aagtta---cgctttc---tatatagGGTGCTGTATGTATGAGATGGCAGCTCATCGGCCTGCCTTCAAGGCTTTT
upper sequence: GRMZM2G137118_T02 (Zea mays), 3'ss of exon 10
lower sequence: Vv06s0009g00690.t01 (Vitis vinifera), 3'ss of exon 9
gtattacgttttacctggttcaattctttcagtaatgtgagatgtttacataactggtgatttattataaattcctgacttaacatgttttcatt--tgcttagGATGTTGTATGTATGAGATGGCAGCTCACCGCCCTGCCTTCAAGGCATTT
| | ||| || ||| | || ||| | ||| | | || || || || ||| |||| || | ||| || ||||||||||||||||| ||||| |||||||| || ||||| |||
-------------------gtatgtgttttcatagtgtctggtg-----atatttatggatctgcagttg-tttgtggctaaat---tttgcattgctgatcagGTTGCTGTATGTATGAGATGGCTGCTCATCGCCCTGCATTTAAGGCTTTT
upper sequence: GRMZM2G137118_T02 (Zea mays), 3'ss of exon 10
lower sequence: PP1S22_216V6.1 (Physcomitrella patens), 3'ss of exon 9
gtattacgttt--tacctggttcaattctttcagtaatgtgagatgtttacataactggtgatttattataaattcctgact-taacatgttttcatttgcttagGATGTTGTATGTATGAGATGGCAGCTCACCGCCCTGCCTTCAAGGCATTT
||| | | || | | |||| || | | | | || | ||||| || |||| | |||| || | | ||| ||| |||||||||||||| |||||||||||||| || || |||||||| |||
gtagtcagcttatttctctcttcactttctgttgagacaagtcctggacttactgctggtagccctcacctggtttctgatcgtgacatcttgttgtctgc--agGGTGTTGTATGTATGAAATGGCAGCTCACCGTCCGGCGTTCAAGGCTTTT
upper sequence: GRMZM2G137118_T02 (Zea mays), 3'ss of exon 10
lower sequence: EFJ20709 (Selaginella moellendorffii), 3'ss of exon 9
gtattacgttttacctggttcaattctttcagtaatgtga-gatgtttacataactggtg-atttattataaattcctgacttaacatgttttcatttgcttagGATGTTGTATGTATGAGATGGCAGCTCACCGCCCTGCCTTCAAGGCATTT
||| ||| |||| || || || | ||| ||| ||| ||| | |||| | |||| |||||||||||||||||||||||| |||||||| ||||| ||||| || ||
-------------------------------gtatgctgatgatggttccaagcttgtcgcattgatt-----ttcttga-------tcttttgaaatgct-agGATGTTGTATGTATGAGATGGCTGCTCACCGACCTGCTTTCAAAGCCTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acataactggtgatttattataaattcctgacttaacatgttttcatttgcttagGATGTTGTATGTATGAGATGGCAGCTCACCGCCCTGCCTTCAAGGCATTT
ttttcattt CT-rich tract
tgatttattataaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattacgttttacctggttcaattctttcagtaatgtgagatgtttacataactggtgatttattataaattcctgacttaacatgttttcatttgcttagGATGTTGTATGTATGAGATGGCAGCTCACCGCCCTGCCTTCAAGGCATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA