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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcagcattctctactttttagccttactaccagcaagtctaacctggaacgcgtcatgcttaatatcttctgcagATCGAGTACTCTTCACTTCTTGATGTAAGGCTACTGAAGGGTATTGAACCAGTCCCCGGGGCTTTCAGTACTCCCTTGGCAGAAACATGCAATGAAGTTG

Basic information

species Zea mays
transcript GRMZM2G136624_T02
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60340696|gb|DN207669.1|DN207669
EST:     CAGATATGCTTGTGGACTTGTCACCGTACAAGGAAGATGGCTCCTTGGAG                         ATCGAGTACTCTTCACTTCTTGATGTAAGGCTACTGAAGGGTATTGAACCA
genomic: CAGATATGCTTGTGGACTTGTCACCGTACAAGGAAGATGGCTCCTTGGAGgtaatcagca ... tcttctgcagATCGAGTACTCTTCACTTCTTGATGTAAGGCTACTGAAGGGTATTGAACCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccttactaccagcaagtctaacctggaacgcgtcatgcttaatatcttctgcagATCGAGTACTCTTCACTTCTTGATGTAAGGCTACTGAAGGGTATTGAACCAGTCCCCGGGGCTTTCAGTACTCCCTTGGCAGAAACATGCAATGAAGTTG
                                           tatcttct  CT-rich tract
                                       ttaatatctt  TA-rich tract