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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtagctagtaattattgaaatctatattatgattttataatattggttgaatcttatagtttgtgatcttagGAAATATTTCTGTTGGAGGATCACCCATTGGCTCTAAACTTGTCATTTTCTGCAAGCCTTGGCCTTCTACCAGTAACTTTATCACTGAAAACTGCCGGAT

Basic information

species Zea mays
transcript GRMZM2G135256_T03
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135256_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os09g09360.1 (Oryza sativa), 3'ss of exon 10
gttagtagctagtaattattgaaatctatattatgat---------tttataatattg----gttgaatctta-tagtttgtgatcttagGAAATATTTCTGTTGGAGGATCACCCATTGGCTCTAAACTTGTCATTTTCTGCAAGCCTTGGCCTTCTACCAGTAACTTTATCACTGAAAACTGCCGGAT
|| | ||  |  |  |||   |||| |  || |||||         | ||| |||| |    |||||| |||| |  ||| | |||||||||||||||| ||  |||||| |||||| ||||| |||||||||| |||||||  |||||||| ||||||||||| |  |||||  ||| |||||| ||||
gtaattaattcttgcttaccaaaatatggataatgatgtttgtaactgtatgatatggatgtgttgaaacttaatttttttttatcttagGAAATATTTTTGAAGGAGGACCACCCACTGGCTTTAAACTTGTCGTTTTCTGTGAGCCTTGGTCTTCTACCAGTTATATTATCTTTGAGAACTGCTGGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78110849|gb|DV529247.1|DV529247
EST:     CAAGTTCATTTTCTATTGGTACAATAATCCGCTCCAGCTTTGCTCCCAAA                         GAAATATTTCTGTTGGAGGATCACCCATTGGCTCTAAACTTGTCATTTTCT
genomic: CAAGTTCATTTTCTATTGGTACAATAATCCGCTCCAGCTTTGCTCCCAAAgttagtagct ... gtgatcttagGAAATATTTCTGTTGGAGGATCACCCATTGGCTCTAAACTTGTCATTTTCT
EST: gi|71769162|gb|DR967099.1|DR967099
EST:     CAAGTTCATTTTCTATTGGTACAATAATCCGCTCCAGCTTTGCTCCCAAA                         GAAATATTTCTGTTGGAGGATCACCCATTGGCTCTAAACTTGTCATTTTCT
genomic: CAAGTTCATTTTCTATTGGTACAATAATCCGCTCCAGCTTTGCTCCCAAAgttagtagct ... gtgatcttagGAAATATTTCTGTTGGAGGATCACCCATTGGCTCTAAACTTGTCATTTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatctatattatgattttataatattggttgaatcttatagtttgtgatcttagGAAATATTTCTGTTGGAGGATCACCCATTGGCTCTAAACTTGTCATTTTCTGCAAGCCTTGGCCTTCTACCAGTAACTTTATCACTGAAAACTGCCGGAT
     tatattatgattttat  TA-rich tract