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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtggggctcaaccatggtgtgtcttgcatgtctcagatgttcaacaacatttgctctcgtcccaatgatgatgacctgatacaccttatctaattgcagGTGATTACAATGGAAAAGAGTTATATTCCTACTAGCCTAGCATCCAGCCCGTCCTCGGAACTCCTGTGGACTGTCATGGGCGCATCAAACATGCCCAGCC

Basic information

species Zea mays
transcript GRMZM2G131998_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131998_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g53530.1 (Oryza sativa), 3'ss of exon 9
tgtggggctcaaccatggtgtgtcttgcatgtctcagatgttcaacaaca--------tttgctctcgtccca-atgatgatg----acctgata---caccttatctaattgcagGTGATTACAATGGAAAAGAGTTATATTCCTACTAGCCTAGCATCCAGCCCGTCCTCGGAACTCCTGTGGACTGTCATGGGCGCATCAAACATGCCCAGCC
                    | |||||  || ||||| ||||||| |  |        |||  |||  |     ||  || ||    | || |||   |  |   |  | |  |||||| |||||| ||||||| | |||||||||||||||||  | ||||||   ||  | || || || ||||| |||||||||||||| || ||||| |  |
---------------caagatatcttgt-tggctcagctgttcaatagtagtacctttttttttctttttttgtatattgctggaaaaactaataattcctcccctgcactaccagGTGGTTACAACGGAAAAGTGCTATATTCCTACTAGCCTGTCTTCCAGCTTCTCAGCAGATCTTCTATGGACCGTCATGGGCGCATCGAATATGCCTAATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78091376|gb|DV519750.1|DV519750
EST:     TAATGCTTTTAGCATGTGATTTGGTAGGAAAGAAGCTATCTTTCCTAAAG                         GTGATTACAATGGAAAAGAGTTATATTCCTACTAGCCTAGCATCCAGCCCG
genomic: TAATGCTTTTAGCATGTGATTTGGTAGGAAAGAAGCTATCTTTCCTAAAGgtatgtctat ... ctaattgcagGTGATTACAATGGAAAAGAGTTATATTCCTACTAGCCTAGCATCCAGCCCG
EST: gi|13149651|gb|BG319973.1|BG319973
EST:     TAATGCTTTTAGCATGTGATTTGGTAGGAAAGAAGCTATCTTTCCTAAAG                         GTGATTACAATGGAAAAGAGTTATATTCCTACTAGCCTAGCATCCAGCCCG
genomic: TAATGCTTTTAGCATGTGATTTGGTAGGAAAGAAGCTATCTTTCCTAAAGgtatgtctat ... ctaattgcagGTGATTACAATGGAAAAGAGTTATATTCCTACTAGCCTAGCATCCAGCCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacatttgctctcgtcccaatgatgatgacctgatacaccttatctaattgcagGTGATTACAATGGAAAAGAGTTATATTCCTACTAGCCTAGCATCCAGCCCGTCCTCGGAACTCCTGTGGACTGTCATGGGCGCATCAAACATGCCCAGCC
                                           atctaat  putative branch site (score: 3)
                                       ccttatct  CT-rich tract
                                         ttatctaatt  TA-rich tract