1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...acatgcaccgctttagacttaacaaacattgttattgtccgcggcaaataatgtgatgcatctggaagatttattctttaattaagttatgtgcatgcagGTATGAGCTTCCAGATGCACATCCACTTTTACAACAG
species | Zea mays |
transcript | GRMZM2G131756_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACCGAAACTAAAGAATGTGCTTAGGCTTCGAACAGAACACTATGT GTATGAGCTTCCAGATGCACATCCACTTTTACAACAGEST: gi|211540330|gb|FL320588.1|FL320588
genomic: ACCGAAACTAAAGAATGTGCTTAGGCTTCGAACAGAACACTATGTgtaagtggtg ... gtgcatgcagGTATGAGCTTCCAGATGCACATCCACTTTTACAACAG
EST: CCTGTACCGAAACTAAAGAATGTGCTTAGGCTTCGAACAGAACACTATGT GTATGAGCTTCCAGATGCACATCCACTTTTACAACAGEST: gi|9952695|gb|BE639158.1|BE639158
genomic: CCTGTACCGAAACTAAAGAATGTGCTTAGGCTTCGAACAGAACACTATGTgtaagtggtg ... gtgcatgcagGTATGAGCTTCCAGATGCACATCCACTTTTACAACAG
EST: CCTGTACCGAAACTAAAGAATGTGCTTAGGCTTCGAACAGAACACTATGT GTATGAGCTTCCAGATGCACATCCACTTTTACAACAGEST: gi|60339031|gb|DN206004.1|DN206004
genomic: CCTGTACCGAAACTAAAGAATGTGCTTAGGCTTCGAACAGAACACTATGTgtaagtggtg ... gtgcatgcagGTATGAGCTTCCAGATGCACATCCACTTTTACAACAG
EST: CCTGTACCGAAACTAAAGAATGTGCTTAGGCTTCGAACAGAACACTATGT GTATGAGCTTCCAGATGCACATCCACTTTTACAACAG
genomic: CCTGTACCGAAACTAAAGAATGTGCTTAGGCTTCGAACAGAACACTATGTgtaagtggtg ... gtgcatgcagGTATGAGCTTCCAGATGCACATCCACTTTTACAACAG
aaataatgtgatgcatctggaagatttattctttaattaagttatgtgcatgcagGTATGAGCTTCCAGATGCACATCCACTTTTACAACAG
ctttaat putative branch site (score: 4)
aagatttattctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatgcaccgctttagacttaacaaacattgttattgtccgcggcaaataatgtgatgcatctggaagatttattctttaattaagttatgtgcatgcagGTATGAGCTTCCAGATGCACATCCACTTTTACAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
acatgca
- - - - - - - - - -taacaaa
- - - - - - - - - - - - - - - - - - - ccgcggc
- - - - - - - - - - - - - - - - - - - - - - - - - - gtgatgc