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gtaagtttaatgttgcattactcagtcatataaatttatcatcataaataactgacatgtgcaaagtttctatttgttctgatgtttatgtccatatgttttggcaattgcttctttagGTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAAGATGTCGAAAAGAAAGATATGGACTGCATTTCACCTTTCCCATTACTTA
species | Zea mays |
transcript | GRMZM2G129554_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTT GTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAAEST: gi|6102016|gb|AW126486.1|AW126486
genomic: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTTgtaagtttaa ... gcttctttagGTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAA
EST: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGNGCATCCATATCGCTT GNTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAAEST: gi|21809935|gb|BQ668253.1|BQ668253
genomic: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTTgtaagtttaa ... gcttctttagGTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAA
EST: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTT GTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAAEST: gi|87155790|gb|DY400579.1|DY400579
genomic: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTTgtaagtttaa ... gcttctttagGTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAA
EST: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTT GTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAAEST: gi|78122698|gb|DV541082.1|DV541082
genomic: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTTgtaagtttaa ... gcttctttagGTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAA
EST: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTT GTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAAEST: gi|32933916|gb|CF038728.1|CF038728
genomic: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTTgtaagtttaa ... gcttctttagGTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAA
EST: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTT GTTTCACCAAAGGAGGATAGTACEST: gi|26560161|gb|CA832396.1|CA832396
genomic: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTTgtaagtttaa ... gcttctttagGTTTCACCAAAGGAGGATAGTAC
EST: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTT GTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAAEST: gi|32930851|gb|CF035663.1|CF035663
genomic: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTTgtaagtttaa ... gcttctttagGTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAA
EST: GAATTGGGTGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTT GTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAAEST: gi|22819888|gb|BU499978.1|BU499978
genomic: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTTgtaagtttaa ... gcttctttagGTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAA
EST: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTT GTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAA
genomic: GAATTGGGCGAACAGGTAGAGCAAATAAGACTGGTGCATCCATATCGCTTgtaagtttaa ... gcttctttagGTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAA
agtttctatttgttctgatgtttatgtccatatgttttggcaattgcttctttagGTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAAGATGTCGAAAAGAAAGATATGGACTGCATTTCACCTTTCCCATTACTTA
ttctgat putative branch site (score: 94)
ttgcttcttt putative PPT
atatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttaatgttgcattactcagtcatataaatttatcatcataaataactgacatgtgcaaagtttctatttgttctgatgtttatgtccatatgttttggcaattgcttctttagGTTTCACCAAAGGAGGATAGTACTTTTAAAGAGATTGAGCATATGTTGCAAGATGTCGAAAAGAAAGATATGGACTGCATTTCACCTTTCCCATTACTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA