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...taatgattaaaatctacaatccagattactgtaatccgattgggatctgaacaagcccctaaataagagagcaaaaatcacagtttggtaagttatgcagCTTTCGGCTTCCGGAGATACTGGAATTCCTGAGGTTGTGGCTGATCCGCAAGGGGATGTGGCTAATACATTTCAGAATCTTGGGGCATGTGTTGTTCAAC
species | Zea mays |
transcript | GRMZM2G129208_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGCAGCAGTTTGGAATACCTCACCTCTTTGATTTGCCAATACGGCCAACT CTTTCGGCTTCCGGAGATACTGGAATTCCTGAGGTTGTGGCTGATCCGCAAEST: gi|60400398|gb|DN233205.1|DN233205
genomic: TGCAGCAGTTTGGAATACCTCACCTCTTTGATTTGCCAATACGGCCAACTgtaagttcag ... agttatgcagCTTTCGGCTTCCGGAGATACTGGAATTCCTGAGGTTGTGGCTGATCCGCAA
EST: TGCAGCAGTTTGGAATACCTCACCTCTTTGATTTGCCAATACGGCCAACT CTTTCGGCTTCTGGAGATACTGGAATTCCTGAGGTTGTGGCTGATCCGCAAEST: gi|32920197|gb|CF025009.1|CF025009
genomic: TGCAGCAGTTTGGAATACCTCACCTCTTTGATTTGCCAATACGGCCAACTgtaagttcag ... agttatgcagCTTTCGGCTTCCGGAGATACTGGAATTCCTGAGGTTGTGGCTGATCCGCAA
EST: TGCAGCAGTTTGGAATACCTCACCTCTTTGATTTGCCAATACGGCCAACT CTTTCGGCTTCCGGAGATACTGGAATTCCTGAGGTTGTGGCTGATCCGCAAEST: gi|32921998|gb|CF026810.1|CF026810
genomic: TGCAGCAGTTTGGAATACCTCACCTCTTTGATTTGCCAATACGGCCAACTgtaagttcag ... agttatgcagCTTTCGGCTTCCGGAGATACTGGAATTCCTGAGGTTGTGGCTGATCCGCAA
EST: TGCAGCAGTTTGGAATACCTCACCTCTTTGATTTGCCAATACGGCCAACT CTTTCGGCTTCCGGAGATACTGGAATTCCTGAGGTTGTGGCTGATCCGCAA
genomic: TGCAGCAGTTTGGAATACCTCACCTCTTTGATTTGCCAATACGGCCAACTgtaagttcag ... agttatgcagCTTTCGGCTTCCGGAGATACTGGAATTCCTGAGGTTGTGGCTGATCCGCAA
tctgaacaagcccctaaataagagagcaaaaatcacagtttggtaagttatgcagCTTTCGGCTTCCGGAGATACTGGAATTCCTGAGGTTGTGGCTGATCCGCAAGGGGATGTGGCTAATACATTTCAGAATCTTGGGGCATGTGTTGTTCAAC
ccctaaa putative branch site (score: 3)
taaataaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatgattaaaatctacaatccagattactgtaatccgattgggatctgaacaagcccctaaataagagagcaaaaatcacagtttggtaagttatgcagCTTTCGGCTTCCGGAGATACTGGAATTCCTGAGGTTGTGGCTGATCCGCAAGGGGATGTGGCTAATACATTTCAGAATCTTGGGGCATGTGTTGTTCAAC
- - - - - - - - - - - - - - - - - - - - - - - ctgaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcaaaa