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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcagtgtttcggggggtgcggtccattggactttgaatcgcacgttggtgttgttttccactaacacacacaacatttgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGAAACAGAGGCGCACCCTTACGTCTCCTTCACCATAAATTTTGTCTGAGAC

Basic information

species Zea mays
transcript GRMZM2G128995_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os05g51530.2 (Oryza sativa), 3'ss of exon 10
gtaattcagtgtttcggggggtgcggtccattggactttgaatcgcacgttggtgttgttttccactaacacacacaacatttgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGAAACAGAGGCGCACCCTTACGTCTCCTTCACCATAAATTTTGTCTGAGAC
||||||||| ||||  |   |||   | ||||| | | | | || ||   ||    || |||   |  |   |   | | | |||| ||||||||||| |||||||| |||||||| || || || || ||||||||||||||||| ||||| ||||| || || |||||||| ||||||||| ||||||  
gtaattcagcgtttgagtttgtg---ttcattgcattgttagtcacaacatgcacctgcttttgtc--attaattgagcctctgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAAACCGAGGCTCACCCCTATGTTTCCTTCACAATAAATTTTATCTGAGCA

upper sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 3'ss of exon 10
gtaattcagtgtttcggggggtgcggtccattggactttgaatcgcacgttggtgttgttttccactaacacacacaacatttgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGAAACAGAGGCGCACCCTTACGTCTCCTTCACCATAAATTTTGTCTGAGAC
||||||||| ||||  |   |||   | ||||| | | | | || ||   ||    || |||   |  |   |   | | | |||| ||||||||||| |||||||| |||||||| || || || || ||||||||||                                                     
gtaattcagcgtttgagtttgtg---ttcattgcattgttagtcacaacatgcacctgcttttgtc--attaattgagcctctgaattgcagTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAG-----------------------------------------------------

upper sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 10
lower sequence: Vv17s0000g00460.t01 (Vitis vinifera), 3'ss of exon 10
--gtaattcagtgtttcggggggtgcggtccattggactttgaatcgcacgttgg--tgttgtt-ttccactaacacacacaacat---ttgaaatgcagTATTTATTGGAAATCCGAAGACGA---CGTAGGCGTCGCCGGTCTGGGAGGTGAAACAGAGGCGCACCCTTACGTCTCCTTCACCATAAATTTTGTCTGAGAC
   |  ||   |||  | ||     | |    ||     ||   ||  |  || |  ||   |  |||   |   |      ||||   | ||| || || |  ||||||||||||||||| ||    | |||  | | | | || ||||||||  | ||  | || |||||||||||||||||||||||| | ||||||   
atctgttttgttgtcgcaggaccacctgagtcttctgacttaggtcaaatttttgactgcaatggttctgattctatttgttacatgcatggaattgtagCACATATTGGAAATCCGAAGATGAACTTGGAGGTATGGGCAGCCTAGGAGGTGATGCTGATTCTCATCCTTACGTCTCCTTCACCATAAATCTGGTCTGA---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88747608|gb|DY531749.1|DY531749
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTTTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|67019107|gb|CO447856.1|CO447856
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|31364225|gb|CD448580.1|CD448580
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|148963814|gb|EE014911.2|EE014911
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTTTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|40334835|gb|CK368905.1|CK368905
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|4610005|gb|AI600844.1|AI600844
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|60338283|gb|DN205256.1|DN205256
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|17929493|gb|BM266453.1|BM266453
EST:     AGAAGAAAGTAAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAAACGACGTAGGCGTCGCCGGTCTGGGAGGT-A
genomic: AGAAGAAAGT-AAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|37401333|gb|CF638029.1|CF638029
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|37377800|gb|CF625543.1|CF625543
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|148984566|gb|EE029569.2|EE029569
EST:     GGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|33095927|gb|CF055921.1|CF055921
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|32910284|gb|CF015096.1|CF015096
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGT
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGT
EST: gi|60354564|gb|DN221537.1|DN221537
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTGTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|12972189|gb|BG267858.1|BG267858
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|211151579|gb|FL387831.1|FL387831
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|24763202|gb|CA398382.1|CA398382
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|149000733|gb|EE037951.2|EE037951
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|211040893|gb|FL451654.1|FL451654
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|149098810|gb|EE184821.2|EE184821
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|148968977|gb|EE019671.2|EE019671
EST:     GAGAAGAAAGTAAGGAGCATTTTAGAGGAGCTTTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTTTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|37394376|gb|CF634461.1|CF634461
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|110964923|gb|EE184823.1|EE184823
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|40303110|gb|CK347497.1|CK347497
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|149000703|gb|EE037917.2|EE037917
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|148954148|gb|EC899547.2|EC899547
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|67017448|gb|CO446197.1|CO446197
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|37391067|gb|CF632773.1|CF632773
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|32907248|gb|CF012061.1|CF012061
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|14245311|gb|BG873893.1|BG873893
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|78076481|gb|DV504915.1|DV504915
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|211201056|gb|FL359983.1|FL359983
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|67013699|gb|CO442448.1|CO442448
EST:     AGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGNCA-TGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGGAG-TG
genomic: AGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGG-CAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGG-AGGTG
EST: gi|37378328|gb|CF625849.1|CF625849
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|71427969|gb|DR809019.1|DR809019
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTTTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
EST: gi|4388189|gb|AI491361.1|AI491361
EST:     GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG                         TATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAGgtaattcagt ... tgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaatcgcacgttggtgttgttttccactaacacacacaacatttgaaatgcagTATTTATTGGAAATCCGAAGACGACGTAGGCGTCGCCGGTCTGGGAGGTGAAACAGAGGCGCACCCTTACGTCTCCTTCACCATAAATTTTGTCTGAGAC
                          cactaac  putative branch site (score: 1)
                                          atttgaaat  TA-rich tract