Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaaatagggcaacgctaaaatagcgtgtcattgcattagttatgttaactcctatcctatgatattatgatacagGATGGTTTGAAAGGAGCTCTTGGGTCTAAGAAAACTGAGACACTTCCGGTTGGCGAAGGTCCAGTACCGCTGCCAAAACCA

Basic information

species Zea mays
transcript GRMZM2G128748_T01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811078|gb|BQ295556.1|BQ295556
EST:     TCCAAGGTAGCCATGGTGGGAAAGACACTCTGAAGTTGGAAGAAACGAAG                         GATGGTTTGAAAGGAGCTCTTGGGTCTAAGAAAACTGAGACACT
genomic: TCCAAGGTAGCCATGGTGGGAAAGACACTCTGAAGTTGGAAGAAACGAAGgtatgcaaat ... tatgatacagGATGGTTTGAAAGGAGCTCTTGGGTCTAAGAAAACTGAGACACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcgtgtcattgcattagttatgttaactcctatcctatgatattatgatacagGATGGTTTGAAAGGAGCTCTTGGGTCTAAGAAAACTGAGACACTTCCGGTTGGCGAAGGTCCAGTACCGCTGCCAAAACCA
                      tgttaac  putative branch site (score: 2)
                                     tatgatattatgata  TA-rich tract