1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggaaacaaaggttcactgggcataattacaaaatcccatatcagttgtgtgctcttttagttcccttcatccaaagacagttctccttattgatgtttagATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTGCCCTTTCTAACCTTCAGCAGAGAGAAATAAGCA
species | Zea mays |
transcript | GRMZM2G126517_T01 |
intron # | 10 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTA ATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTGEST: gi|211233176|gb|FL456644.1|FL456644
genomic: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTAgtatcctata ... tgatgtttagATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTG
EST: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTA ATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTGEST: gi|9255049|gb|BE345517.1|BE345517
genomic: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTAgtatcctata ... tgatgtttagATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTG
EST: GCTTGAAAGAGTAAAAGAACTATCCGGAGGATCTTCCTTGGAAGCTA ATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTGEST: gi|8516322|gb|BE123048.1|BE123048
genomic: GCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTAgtatcctata ... tgatgtttagATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTG
EST: CATGCTTGAAAGAGTAAAAGAACTAACCGGAGGATCTTCCTTGGAAGCTA ATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTGEST: gi|9255050|gb|BE345518.1|BE345518
genomic: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTAgtatcctata ... tgatgtttagATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTG
EST: AAAGAACTAACCGGAGGATCTTCCTTGGAAGCTA ATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTGEST: gi|166684431|gb|EG202720.1|EG202720
genomic: AAAGAACTAACTGGAGGATCTTCCTTGGAAGCTAgtatcctata ... tgatgtttagATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTG
EST: AGGATCTTCCTTGGAAGCTA ATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTGEST: gi|71533571|gb|DR784330.1|DR784330
genomic: AGGATCTTCCTTGGAAGCTAgtatcctata ... tgatgtttagATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTG
EST: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTA ATATTGCACCTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTGEST: gi|71764026|gb|DR961963.1|DR961963
genomic: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTAgtatcctata ... tgatgtttagATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTG
EST: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTA ATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTGEST: gi|211233175|gb|FL456643.1|FL456643
genomic: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTAgtatcctata ... tgatgtttagATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTG
EST: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATYTTCCTTGGAAGCTA ATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTGEST: gi|88748923|gb|DY533064.1|DY533064
genomic: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTAgtatcctata ... tgatgtttagATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTG
EST: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTA ATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTGEST: gi|74236391|gb|DT644305.1|DT644305
genomic: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTAgtatcctata ... tgatgtttagATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTG
EST: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTA ATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTGEST: gi|149082842|gb|EE172068.2|EE172068
genomic: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTAgtatcctata ... tgatgtttagATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTG
EST: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTA ATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTGEST: gi|211420627|gb|FL480892.1|FL480892
genomic: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTAgtatcctata ... tgatgtttagATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTG
EST: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTA ATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTG
genomic: CATGCTTGAAAGAGTAAAAGAACTAACTGGAGGATCTTCCTTGGAAGCTAgtatcctata ... tgatgtttagATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTG
tgtgtgctcttttagttcccttcatccaaagacagttctccttattgatgtttagATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTGCCCTTTCTAACCTTCAGCAGAGAGAAATAAGCA
ctccttatt putative branch site
ttctccttatt CT-rich tract
ttttagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaaacaaaggttcactgggcataattacaaaatcccatatcagttgtgtgctcttttagttcccttcatccaaagacagttctccttattgatgtttagATATTGCACTTGTTAAGAACAATGCTCTTATTGGTGCGAACATTGCTGTTGCCCTTTCTAACCTTCAGCAGAGAGAAATAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- aaacaaa
- - - - - -ttcactg
- - - - - - - - - - - - - tacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaca