1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaacaccccttctcaatcacattgtcaatacacagttaatttacactccaatccatctcaatacattcatgaggattaagatgaatacgagagtatccaaacaaggcctgaacagtagccggtcactaatccttccattgttacatgttcttccctttttctgaatattgtagATATGAAGGAACCAGAGGGATCGCCGCAACTGCCAGCACATACGGATTACCTCCAATGGATCAGCGTTTGGCTGCGCAGAATCTGCAGGTCATGAACCAC
species | Zea mays |
transcript | GRMZM2G126079_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGGTTCAGCAACATCCAGTTCAAGTACCGAATTATACTTTCCCCTCCGG ATATGAAGGAACCAGAGGGATCGCCGCAACTGCCAGCACATACGGATTCCCEST: gi|74243473|gb|DT651387.1|DT651387
genomic: ATGGTTCAGCAACATACAGTTCAAGTACCGAATTATACTTTCCCCTCCGGgtaacacccc ... aatattgtagATATGAAGGAACCAGAGGGATCGCCGCAACTGCCAGCACATACGGATTACC
EST: ATGGTTCAGCAACATACAGTTCAAGTACCGAATTATACTTTCCCCTCCGG ATATGAAGGAACCAGAGGGATCGCCGCAACTGCCAGCACATACGGATTACCEST: gi|71298675|gb|DR785312.1|DR785312
genomic: ATGGTTCAGCAACATACAGTTCAAGTACCGAATTATACTTTCCCCTCCGGgtaacacccc ... aatattgtagATATGAAGGAACCAGAGGGATCGCCGCAACTGCCAGCACATACGGATTACC
EST: ATGGTTCAGCAACATACAGTTCAAGTACCGAATTATACTTTCCCCTCCGG ATATGAAGGAACCAGAGGGATCGCCGCAACTGCCAGCACATACGGATTACC
genomic: ATGGTTCAGCAACATACAGTTCAAGTACCGAATTATACTTTCCCCTCCGGgtaacacccc ... aatattgtagATATGAAGGAACCAGAGGGATCGCCGCAACTGCCAGCACATACGGATTACC
ccggtcactaatccttccattgttacatgttcttccctttttctgaatattgtagATATGAAGGAACCAGAGGGATCGCCGCAACTGCCAGCACATACGGATTACCTCCAATGGATCAGCGTTTGGCTGCGCAGAATCTGCAGGTCATGAACCAC
cactaat putative branch site (score: 11)
ttcttccctttttctg putative PPT
tttttctgaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaccccttctcaatcacattgtcaatacacagttaatttacactccaatccatctcaatacattcatgaggattaagatgaatacgagagtatccaaacaaggcctgaacagtagccggtcactaatccttccattgttacatgttcttccctttttctgaatattgtagATATGAAGGAACCAGAGGGATCGCCGCAACTGCCAGCACATACGGATTACCTCCAATGGATCAGCGTTTGGCTGCGCAGAATCTGCAGGTCATGAACCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG