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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attttgatttgaagtggtccctttagcagatatctttatcaaaagaacttttgcagacatagcaaggaagtacacatttttttaacaatgtcatctgcagGCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATCTTAACTACCCGACAATCAGCACGAGCCCTACTCGCAATAAGTGACTACTTCTCTC

Basic information

species Zea mays
transcript GRMZM2G125243_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G125243_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os01g59350.2 (Oryza sativa), 3'ss of exon 10
attttgatttgaagtggtccctttagcagatatctttatcaaaagaacttttgcagacatagcaaggaagtacacattt-ttttaacaatgtc--atctgcagGCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATCTTAACTACCCGACAATCAGCACGAGCCCTACTCGCAATAAGTGACTACTTCTCTC
||    |||  | |   | ||   |  | |||    ||   |||    | || | |    |    | || |     |    | |||| ||| |  ||||||||||||||||||| ||||| || || ||||| |||||||| ||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||||| |
ataaccattaaacggaatacc---aagaaatagacatagagaaatgtatatttctgttgcaaattgtaacttttggtgaactataacgatgccttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACCACTCGCCAGTCAGCACGAGCTCTACTTGCAATAAGTGACTACTTCTCCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32835771|gb|CD975449.1|CD975449
EST:     TGGCGATGGCTATGGGAAAACTTGGCACTCTTGAGAACTTTCTACGACAG                         GCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATCTTAACT
genomic: TGGCGATGGCTATGGGAAAACTTGGCACTCTTGAGAACTTTCTACGACAGgtttgtcatg ... tcatctgcagGCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATCTTAACT
EST: gi|32929944|gb|CF034756.1|CF034756
EST:     TGGCGATGGCTATGGGAAAACTTGGCACTCTTGAGACCTTTCTACGACAG                         GCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATCTTAACT
genomic: TGGCGATGGCTATGGGAAAACTTGGCACTCTTGAGAACTTTCTACGACAGgtttgtcatg ... tcatctgcagGCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATCTTAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttttgcagacatagcaaggaagtacacatttttttaacaatgtcatctgcagGCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATCTTAACTACCCGACAATCAGCACGAGCCCTACTCGCAATAAGTGACTACTTCTCTC
                                  ttttaac  putative branch site (score: 2)
                            acatttttttaacaat  TA-rich tract