Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatttatctactatgtcaataccttgtatttcctacaactgtgcataatataatccttctatttcctgcaacctgttctgttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGCAGGCTATCTCCTTGCTAGCTCCCGTCATGGGTGCAGAGATCACTTGTC

Basic information

species Zea mays
transcript GRMZM2G122135_T01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33092634|gb|CF052628.1|CF052628
EST:     ATGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTT
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTT
EST: gi|31357128|gb|CD441485.1|CD441485
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|18169928|gb|BM339768.1|BM339768
EST:     GCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: GCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|31356310|gb|CD440667.1|CD440667
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAN                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|16377717|gb|BI992076.1|BI992076
EST:     AAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: AAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|5499176|gb|AI855043.1|AI855043
EST:     GAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: GAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|22549241|gb|BU101442.1|BU101442
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|5018372|gb|AI714565.1|AI714565
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|84977249|gb|DW475671.1|DW475671
EST:     TGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|29545063|gb|CB605241.1|CB605241
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|116828872|gb|EC861659.1|EC861659
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|32914759|gb|CF019571.1|CF019571
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGG-CAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|31362520|gb|CD446877.1|CD446877
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|37393714|gb|CF634122.1|CF634122
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|29947616|gb|CB816748.1|CB816748
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|17931830|gb|BM268790.1|BM268790
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|60352636|gb|DN219609.1|DN219609
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|211206781|gb|FL154157.1|FL154157
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|24763713|gb|CA398884.1|CA398884
EST:     GTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: GTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|60343317|gb|DN210290.1|DN210290
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|20803005|gb|BQ294055.1|BQ294055
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|33101424|gb|CF061384.1|CF061384
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|17930061|gb|BM267021.1|BM267021
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|40336631|gb|CK370701.1|CK370701
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|18169253|gb|BM339093.1|BM339093
EST:     ATGCAGCATATAATTCCTCAG                         GTGC-GGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: ATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|211206778|gb|FL154154.1|FL154154
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|18167158|gb|BM336997.1|BM336997
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|37388540|gb|CF631479.1|CF631479
EST:     TCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|78025113|gb|DV493500.1|DV493500
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|32845037|gb|CD984718.1|CD984718
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGT
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGT
EST: gi|6031522|gb|AW076424.1|AW076424
EST:     TGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGACAAGATCACCAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|78119292|gb|DV537676.1|DV537676
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|6056718|gb|AW091123.1|AW091123
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCCCTATTTGTACCGCATGACGATTTTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|24766051|gb|CA401209.1|CA401209
EST:     TGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|60349044|gb|DN216017.1|DN216017
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|18175671|gb|BM350900.1|BM350900
EST:     TGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaactgtgcataatataatccttctatttcctgcaacctgttctgttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGCAGGCTATCTCCTTGCTAGCTCCCGTCATGGGTGCAGAGATCACTTGTC
                                     cctgttctgttttccc  CT-rich tract
          ataatataatcctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttatttatctactatgtcaataccttgtatttcctacaactgtgcataatataatccttctatttcctgcaacctgttctgttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGCAGGCTATCTCCTTGCTAGCTCCCGTCATGGGTGCAGAGATCACTTGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA