1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtcgctgcatagctaacaaccgcgggaaccggcctgattttttgtgctccttctttttgcctgacctgacatgacagtgattttgctatgctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTGGGCCTGCAGCCCGGCGAGGCCTTCACCGTTCGCAACATAGCCGCCATGG
species | Zea mays |
transcript | GRMZM2G121878_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAG TACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCGTCGGTGACACTGEST: gi|5525295|gb|AI861134.1|AI861134
genomic: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAGgtatgcgcta ... ctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTG
EST: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAG TACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTGEST: gi|71428351|gb|DR809401.1|DR809401
genomic: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAGgtatgcgcta ... ctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTG
EST: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAG TACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTGEST: gi|5525294|gb|AI861133.1|AI861133
genomic: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAGgtatgcgcta ... ctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTG
EST: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAG TACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTGEST: gi|211236657|gb|FL186529.1|FL186529
genomic: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAGgtatgcgcta ... ctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTG
EST: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAG TACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCGTCGGTGACACTGEST: gi|78117335|gb|DV535722.1|DV535722
genomic: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAGgtatgcgcta ... ctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTG
EST: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAG TACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTGEST: gi|12968035|gb|BG264982.1|BG264982
genomic: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAGgtatgcgcta ... ctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTG
EST: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAG TACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTGEST: gi|13178395|gb|BG349668.1|BG349668
genomic: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAGgtatgcgcta ... ctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTG
EST: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAG TACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTEST: gi|10697521|gb|BE997245.1|BE997245
genomic: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAGgtatgcgcta ... ctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGT
EST: GGCCTCTCAAGTCCGGCCAGGCCCCCAAG TACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTGEST: gi|13516151|gb|BG518427.1|BG518427
genomic: GGCCTCTCAAGTCCGGCCAGGCCCCCAAGgtatgcgcta ... ctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTG
EST: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAG TACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTGEST: gi|78103755|gb|DV522183.1|DV522183
genomic: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAGgtatgcgcta ... ctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTG
EST: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAG TACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTGEST: gi|211236654|gb|FL186526.1|FL186526
genomic: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAGgtatgcgcta ... ctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTG
EST: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAG TACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCGTCGGTGACACTGEST: gi|74235295|gb|DT643209.1|DT643209
genomic: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAGgtatgcgcta ... ctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTG
EST: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAG TACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTGEST: gi|6827008|gb|AW330651.1|AW330651
genomic: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAGgtatgcgcta ... ctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTG
EST: C-AGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAG TACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCGTCGGTGACACTGEST: gi|211236652|gb|FL186524.1|FL186524
genomic: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAGgtatgcgcta ... ctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTG
EST: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAG TACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCGTCGGTGACACTG
genomic: CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAGgtatgcgcta ... ctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTG
gctccttctttttgcctgacctgacatgacagtgattttgctatgctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTGGGCCTGCAGCCCGGCGAGGCCTTCACCGTTCGCAACATAGCCGCCATGG
acctgac putative branch site (score: 3)
ttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgctgcatagctaacaaccgcgggaaccggcctgattttttgtgctccttctttttgcctgacctgacatgacagtgattttgctatgctgcatgcagTACATGGTGTTCGCTTGCTCCGACTCCCGTGTGTGCCCATCGGTGACCCTGGGCCTGCAGCCCGGCGAGGCCTTCACCGTTCGCAACATAGCCGCCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG