1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgcctgttattcctcttactgcagaacgtttcccgtgtcattcctatggaaatgattacctctgtttgaactctgaaccaatgttgaaactctgatcggctgccacagATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAG
species | Zea mays |
transcript | GRMZM2G121210_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAACCACGTAAAAAGGCTGCATCTAAAAAGCTGGATAGCGATACAGAAG ATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAAEST: gi|32809224|gb|CD961458.1|CD961458
genomic: GAAACCACGTAAAAAGGCTGCATCTAAAAAGCTGGATAGCGATACAGAAGgtgcctgtta ... gctgccacagATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAA
EST: GAAACCACGTAAAAAGGCTGCATCTAAAAAGCTGGATAGCGATACAGAAG ATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAGCCGAAGAAAAEST: gi|22819854|gb|BU499944.1|BU499944
genomic: GAAACCACGTAAAAAGGCTGCATCTAAAAAGCTGGATAGCGATACAGAAGgtgcctgtta ... gctgccacagATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAA
EST: GAAACCACGTAAAAAGGCTGCATCTAAAAAGCTGGATAGCGATACAGAAG ATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAAEST: gi|211185794|gb|FL324655.1|FL324655
genomic: GAAACCACGTAAAAAGGCTGCATCTAAAAAGCTGGATAGCGATACAGAAGgtgcctgtta ... gctgccacagATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAA
EST: GAAACCACGTAAAAAGGCTGCATCTAAAAAGCTGGATAGCGATACAGAAG ATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAAEST: gi|21987134|gb|BQ778662.1|BQ778662
genomic: GAAACCACGTAAAAAGGCTGCATCTAAAAAGCTGGATAGCGATACAGAAGgtgcctgtta ... gctgccacagATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAA
EST: GAAACCACGTAAAAAGGCTGCATCTAAAAAGCTGGATAGCGATACAGAAG ATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAAEST: gi|32791656|gb|CD943892.1|CD943892
genomic: GAAACCACGTAAAAAGGCTGCATCTAAAAAGCTGGATAGCGATACAGAAGgtgcctgtta ... gctgccacagATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAA
EST: GAAACCACGTAAAAAGGCTGCATCTAAAAAGCTGGATAGCGATACAGAAG ATGATGATTTTGAACCAGCGGCTGCAAAGCGTGGAGCTCAACCGAAGAAAAEST: gi|31664432|gb|CD573365.1|CD573365
genomic: GAAACCACGTAAAAAGGCTGCATCTAAAAAGCTGGATAGCGATACAGAAGgtgcctgtta ... gctgccacagATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAA
EST: GAAACCACGTAAAAAGGCTGCATCTAAAAAGCTGGATAGCGATACAGAAG ATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAAEST: gi|5343131|gb|AI795541.1|AI795541
genomic: GAAACCACGTAAAAAGGCTGCATCTAAAAAGCTGGATAGCGATACAGAAGgtgcctgtta ... gctgccacagATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAA
EST: CACGTAAAAAGGCTGCATCTAAAAAGCTGGATAGCGATACAGAAG ATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAA
genomic: CACGTAAAAAGGCTGCATCTAAAAAGCTGGATAGCGATACAGAAGgtgcctgtta ... gctgccacagATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAA
gattacctctgtttgaactctgaaccaatgttgaaactctgatcggctgccacagATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAG
ctctgat putative branch site (score: 27)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcctgttattcctcttactgcagaacgtttcccgtgtcattcctatggaaatgattacctctgtttgaactctgaaccaatgttgaaactctgatcggctgccacagATGATGATTTTGAACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG